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Aliases for LMNB1-DT Gene

Subcategory (RNA class) for LMNB1-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LMNB1-DT Gene

  • LMNB1 Divergent Transcript 2 3 5

External Ids for LMNB1-DT Gene

Summaries for LMNB1-DT Gene

GeneCards Summary for LMNB1-DT Gene

LMNB1-DT (LMNB1 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LMNB1-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LMNB1-DT Gene

Genomics for LMNB1-DT Gene

GeneHancer (GH) Regulatory Elements for LMNB1-DT Gene

Promoters and enhancers for LMNB1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J126775 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 670.3 -0.9 -946 5.2 CLOCK ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 LMNB1-DT LMNB1 LOC101927488 LINC02039 RNU6-752P TEX43 ALDH7A1 GC05M126868
GH05J126747 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.5 +28.7 28711 1.9 PKNOX1 ARNT IRF4 POLR2B ZNF766 CBX5 ZNF143 FOS JUNB ZNF592 PHAX LMNB1 LMNB1-DT ALDH7A1 GC05P126739 RNU6-752P
GH05J126679 Enhancer 1.3 FANTOM5 Ensembl ENCODE 12.5 +96.5 96533 1.9 PKNOX1 TCF12 POLR2B GATA2 ATF7 NCOA1 MBD2 HMBOX1 KDM1A WT1 LMNB1 LMNB1-DT RNU6-752P ALDH7A1 LOC105379162 HSPE1P10
GH05J126675 Enhancer 1.1 Ensembl ENCODE 12.5 +100.8 100756 1.2 ATF1 ARNT ARID4B SIN3A ZNF213 ARID2 ZNF143 ATF7 DEK NCOA1 LOC105379162 LMNB1 LMNB1-DT RNU6-752P ALDH7A1 HSPE1P10
GH05J126808 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.8 -33.3 -33321 4.7 CTCF ZNF654 ZNF362 JUN TEAD2 ZNF384 RAD21 TEAD3 FOSL1 ZNF664 LMNB1 LMNB1-DT MARCH3 RNU6-752P ALDH7A1 GC05M126868
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LMNB1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for LMNB1-DT Gene

Genomic Locations for LMNB1-DT Gene
chr5:126,751,963-126,777,046
(GRCh38/hg38)
Size:
25,084 bases
Orientation:
Minus strand

Genomic View for LMNB1-DT Gene

Genes around LMNB1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LMNB1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LMNB1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMNB1-DT Gene

Function for LMNB1-DT Gene

Phenotypes From GWAS Catalog for LMNB1-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LMNB1-DT Gene

Localization for LMNB1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LMNB1-DT Gene

Pathways & Interactions for LMNB1-DT Gene

SuperPathways for LMNB1-DT Gene

No Data Available

Interacting Proteins for LMNB1-DT Gene

Gene Ontology (GO) - Biological Process for LMNB1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LMNB1-DT Gene

Drugs & Compounds for LMNB1-DT Gene

No Compound Related Data Available

Transcripts for LMNB1-DT Gene

mRNA/cDNA for LMNB1-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LMNB1-DT Gene

No ASD Table

Relevant External Links for LMNB1-DT Gene

GeneLoc Exon Structure for
LMNB1-DT
ECgene alternative splicing isoforms for
LMNB1-DT

Expression for LMNB1-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMNB1-DT Gene

Orthologs for LMNB1-DT Gene

Evolution for LMNB1-DT Gene

ENSEMBL:
Gene Tree for LMNB1-DT (if available)
TreeFam:
Gene Tree for LMNB1-DT (if available)

No data available for Orthologs for LMNB1-DT Gene

Paralogs for LMNB1-DT Gene

No data available for Paralogs for LMNB1-DT Gene

Variants for LMNB1-DT Gene

Sequence variations from dbSNP and Humsavar for LMNB1-DT Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs111865788 likely-benign, Leukodystrophy, Adult-Onset 126,777,211(-) G/C/T upstream_transcript_variant
rs138982187 likely-benign, Leukodystrophy, Adult-Onset 126,777,018(-) T/C upstream_transcript_variant
rs190689756 likely-benign, Leukodystrophy, Adult-Onset 126,776,615(-) C/T upstream_transcript_variant
rs201308997 uncertain-significance, Leukodystrophy, Adult-Onset 126,776,957(-) G/A upstream_transcript_variant
rs35091677 benign, Leukodystrophy, Adult-Onset 126,776,888(-) T/C upstream_transcript_variant

Additional Variant Information for LMNB1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LMNB1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LMNB1-DT Gene

Disorders for LMNB1-DT Gene

Additional Disease Information for LMNB1-DT

No disorders were found for LMNB1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMNB1-DT Gene

Publications for LMNB1-DT Gene

No publications were found for LMNB1-DT Gene.

Products for LMNB1-DT Gene

Sources for LMNB1-DT Gene

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