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Aliases for LMLN-AS1 Gene

Subcategory (RNA class) for LMLN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LMLN-AS1 Gene

  • LMLN Antisense RNA 1 2 3 5
  • LMLN Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for LMLN-AS1 Gene

Previous GeneCards Identifiers for LMLN-AS1 Gene

  • GC00U933359
  • GC03M197766

Summaries for LMLN-AS1 Gene

GeneCards Summary for LMLN-AS1 Gene

LMLN-AS1 (LMLN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LMLN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LMLN-AS1 Gene

Genomics for LMLN-AS1 Gene

GeneHancer (GH) Regulatory Elements for LMLN-AS1 Gene

Promoters and enhancers for LMLN-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J198079 Promoter/Enhancer 1.5 Ensembl ENCODE 7.1 -41.3 -41265 1.7 ATF1 ZBTB7B ZNF48 POLR2B GLIS2 ELK1 ZFP91 FOS ATF7 REST ANKRD18DP PIR55813 ENSG00000234742 LMLN-AS1 FRG2FP
GH03J198066 Enhancer 0.6 ENCODE 5 -27.4 -27443 1 NR2F1 BACH1 JUNB BMI1 MEF2B DPF2 BATF IRF4 BCL11A TARDBP GC03P198065 LMLN-AS1 GC03M198075 RNU6-821P ANKRD18DP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LMLN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LMLN-AS1 Gene

Genomic Locations for LMLN-AS1 Gene
chr3:198,038,321-198,039,467
(GRCh38/hg38)
Size:
1,147 bases
Orientation:
Minus strand
chr3:197,765,192-197,766,105
(GRCh37/hg19)
Size:
914 bases
Orientation:
Minus strand

Genomic View for LMLN-AS1 Gene

Genes around LMLN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LMLN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LMLN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMLN-AS1 Gene

Function for LMLN-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LMLN-AS1 Gene

Localization for LMLN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LMLN-AS1 Gene

Pathways & Interactions for LMLN-AS1 Gene

SuperPathways for LMLN-AS1 Gene

No Data Available

Interacting Proteins for LMLN-AS1 Gene

Gene Ontology (GO) - Biological Process for LMLN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LMLN-AS1 Gene

Drugs & Compounds for LMLN-AS1 Gene

No Compound Related Data Available

Transcripts for LMLN-AS1 Gene

mRNA/cDNA for LMLN-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LMLN-AS1 Gene

No ASD Table

Relevant External Links for LMLN-AS1 Gene

GeneLoc Exon Structure for
LMLN-AS1
ECgene alternative splicing isoforms for
LMLN-AS1

Expression for LMLN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LMLN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for LMLN-AS1 Gene

This gene is overexpressed in Testis (x7.8).
genes like me logo Genes that share expression patterns with LMLN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMLN-AS1 Gene

Orthologs for LMLN-AS1 Gene

Evolution for LMLN-AS1 Gene

ENSEMBL:
Gene Tree for LMLN-AS1 (if available)
TreeFam:
Gene Tree for LMLN-AS1 (if available)

No data available for Orthologs for LMLN-AS1 Gene

Paralogs for LMLN-AS1 Gene

No data available for Paralogs for LMLN-AS1 Gene

Variants for LMLN-AS1 Gene

Sequence variations from dbSNP and Humsavar for LMLN-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1002121118 -- 198,040,509(-) C/A upstream_transcript_variant
rs1003174750 -- 198,038,928(-) G/A intron_variant
rs1004345754 -- 198,039,339(-) C/T intron_variant
rs1005485385 -- 198,039,667(-) T/G upstream_transcript_variant
rs1006427924 -- 198,040,988(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LMLN-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv997702 CNV gain 25217958
nsv593165 CNV gain 21841781
nsv527527 CNV gain 19592680
nsv471160 CNV gain 18288195
esv3893858 CNV gain 25118596
esv3893855 CNV gain 25118596
esv3599333 CNV gain 21293372
esv3575649 CNV gain 25503493
esv33797 CNV gain+loss 17666407
esv2763718 CNV gain+loss 21179565
esv2751989 CNV gain 17911159
dgv8869n54 CNV gain 21841781
dgv8866n54 CNV gain 21841781
dgv8865n54 CNV gain 21841781
dgv5046n100 CNV gain 25217958
dgv5045n100 CNV gain 25217958

Additional Variant Information for LMLN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LMLN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LMLN-AS1 Gene

Disorders for LMLN-AS1 Gene

Additional Disease Information for LMLN-AS1

No disorders were found for LMLN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMLN-AS1 Gene

Publications for LMLN-AS1 Gene

No publications were found for LMLN-AS1 Gene.

Products for LMLN-AS1 Gene

Sources for LMLN-AS1 Gene

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