Aliases for LMF1-AS1 Gene

Subcategory (RNA class) for LMF1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LMF1-AS1 Gene

  • LMF1 Antisense RNA 1 2 3 5
  • LA16c-366D3.1 3
  • NONHSAG018223 94
  • HSALNG0108823 169
  • Lnc-SOX8-2 170
  • LMF1-AS1 2

External Ids for LMF1-AS1 Gene

Previous GeneCards Identifiers for LMF1-AS1 Gene

  • GC16P001063
  • GC16P001105
  • GC16P000922
  • GC16P000942
  • GC16P000962
  • GC16P000990
  • GC16P001013
  • GC16P001042

Summaries for LMF1-AS1 Gene

GeneCards Summary for LMF1-AS1 Gene

LMF1-AS1 (LMF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LMF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LMF1-AS1 Gene

Genomics for LMF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for LMF1-AS1 Gene

Promoters and enhancers for LMF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J000919 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 760.3 -0.2 -210 2.2 MYC MAX POLR2A LMF1-AS1 lnc-GNG13-5 LMF1 ENSG00000260807 ENSG00000260316
GH16J000921 Enhancer 0.3 Ensembl dbSUPER 762 -1.4 -1440 0.2 LMF1-AS1 lnc-GNG13-5 ENSG00000260807 ENSG00000260316 LMF1
GH16J000920 Enhancer 0.3 CraniofacialAtlas dbSUPER 750.6 -1.6 -1640 0.2 LMF1-AS1 lnc-GNG13-5 ENSG00000260807 ENSG00000260316 LMF1
GH16J000978 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 13.9 +62.4 62359 9.4 ZNF785 ZBTB6 ZNF133 NFIB ZNF473 SP7 ZSCAN21 ZNF548 EGR1 KLF14 ENSG00000260807 LMF1 SOX8 WDR90 CRAMP1 UBE2I TELO2 JMJD8 ENSG00000261505 WDR24
GH16J000969 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.2 +50.4 50387 3.9 ZNF785 SP1 ZBTB40 ZBTB6 POLR2A ZNF133 ELF1 HLF L3MBTL2 ZNF121 LUC7L LMF1 ENSG00000268836 WDR90 TELO2 CRAMP1 ENSG00000269482 ENSG00000260807 ENSG00000261505 IFT140
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LMF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LMF1-AS1 Gene

Genomic Locations for LMF1-AS1 Gene
chr16:920,941-934,524
(GRCh38/hg38)
Size:
13,584 bases
Orientation:
Plus strand
chr16:971,033-984,495
(GRCh37/hg19)
Size:
13,463 bases
Orientation:
Plus strand

Genomic View for LMF1-AS1 Gene

Genes around LMF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LMF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LMF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMF1-AS1 Gene

Proteins for LMF1-AS1 Gene

Post-translational modifications for LMF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LMF1-AS1 Gene

Domains & Families for LMF1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LMF1-AS1 Gene

Function for LMF1-AS1 Gene

Phenotypes From GWAS Catalog for LMF1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LMF1-AS1 Gene

Localization for LMF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LMF1-AS1 Gene

Pathways & Interactions for LMF1-AS1 Gene

PathCards logo

SuperPathways for LMF1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LMF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LMF1-AS1 Gene

Drugs & Compounds for LMF1-AS1 Gene

No Compound Related Data Available

Transcripts for LMF1-AS1 Gene

mRNA/cDNA for LMF1-AS1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(3) NONCODE transcripts :
(1) LncBook transcripts :
(3) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LMF1-AS1 Gene

No ASD Table

Relevant External Links for LMF1-AS1 Gene

GeneLoc Exon Structure for
LMF1-AS1
ECgene alternative splicing isoforms for
LMF1-AS1

Expression for LMF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LMF1-AS1 Gene

genes like me logo Genes that share expression patterns with LMF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMF1-AS1 Gene

Orthologs for LMF1-AS1 Gene

Evolution for LMF1-AS1 Gene

ENSEMBL:
Gene Tree for LMF1-AS1 (if available)
TreeFam:
Gene Tree for LMF1-AS1 (if available)

No data available for Orthologs for LMF1-AS1 Gene

Paralogs for LMF1-AS1 Gene

No data available for Paralogs for LMF1-AS1 Gene

Variants for LMF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for LMF1-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000055437 -- 924,170(+) G/A intron_variant
rs1000060625 -- 920,768(+) A/C upstream_transcript_variant
rs1000520695 -- 931,384(+) A/C intron_variant
rs1000550199 -- 920,865(+) G/A upstream_transcript_variant
rs1000656534 -- 931,656(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LMF1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1151031 CNV deletion 17803354
esv1180581 CNV deletion 17803354
esv22962 CNV gain+loss 19812545
esv2422427 CNV duplication 17116639
esv26288 CNV loss 19812545
esv2750259 CNV deletion 23290073
esv2750260 CNV deletion 23290073
esv2750261 CNV deletion 23290073
esv2750262 CNV deletion 23290073
esv2750264 CNV deletion 23290073
esv2750265 CNV deletion 23290073
esv3637598 CNV loss 21293372
esv999223 CNV deletion 20482838
nsv1042868 CNV loss 25217958
nsv1046349 CNV loss 25217958
nsv1705 CNV insertion 18451855
nsv428316 CNV gain+loss 18775914
nsv457315 CNV gain 19166990
nsv457316 CNV loss 19166990
nsv457317 CNV loss 19166990
nsv471066 CNV loss 18288195
nsv523227 CNV gain 19592680
nsv571046 CNV gain 21841781
nsv571048 CNV loss 21841781
nsv571049 CNV loss 21841781
nsv821033 CNV duplication 20802225
nsv833116 CNV loss 17160897
nsv952898 CNV deletion 24416366

Additional Variant Information for LMF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LMF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LMF1-AS1 Gene

Disorders for LMF1-AS1 Gene

Additional Disease Information for LMF1-AS1

No disorders were found for LMF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMF1-AS1 Gene

Publications for LMF1-AS1 Gene

No publications were found for LMF1-AS1 Gene.

No data available for External Links for LMF1-AS1 Gene

Products for LMF1-AS1 Gene

Sources for LMF1-AS1 Gene