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Aliases for LMCD1-AS1 Gene

Subcategory (RNA class) for LMCD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LMCD1-AS1 Gene

  • LMCD1 Antisense RNA 1 2 3
  • LMCD1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for LMCD1-AS1 Gene

Summaries for LMCD1-AS1 Gene

GeneCards Summary for LMCD1-AS1 Gene

LMCD1-AS1 (LMCD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LMCD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LMCD1-AS1 Gene

Genomics for LMCD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for LMCD1-AS1 Gene

Promoters and enhancers for LMCD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J008482 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 21.9 +128.3 128252 3.3 FOXA2 RAD21 ZEB1 YY1 ZNF335 SCRT2 FOS SP3 RXRA ZNF398 LMCD1-AS1 LMCD1 GC03M008478 PIR56118
GH03J008496 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 12 +109.5 109473 11 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 LMCD1 SETD5 RAD18 LMCD1-AS1 THUMPD3 PIR52959
GH03J008457 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 20.1 +152.6 152568 5.2 USF1 SIN3A YY1 GATA3 EGR1 ATF7 FOSL2 ZNF687 RXRA REST LMCD1-AS1 LMCD1 GC03M008478 GC03P008440 PIR56118
GH03J008442 Enhancer 1.4 Ensembl ENCODE dbSUPER 17.1 +167.4 167351 5.1 PKNOX1 FOXA2 MLX ARID4B NEUROD1 SIN3A ZNF2 YY1 ZNF143 FOS LMCD1 LMCD1-AS1 RAD18 SETD5 GC03P008440 GC03M008478 PIR56118
GH03J008528 Enhancer 1.2 Ensembl ENCODE dbSUPER 19.8 +82.5 82534 2.4 FOXA2 ARID4B BMI1 RAD21 YY1 EGR1 RCOR1 RXRA NFYC REST LMCD1-AS1 LMCD1 PIR52959
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LMCD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LMCD1-AS1 Gene

Genomic Locations for LMCD1-AS1 Gene
chr3:7,952,805-8,611,924
(GRCh38/hg38)
Size:
659,120 bases
Orientation:
Minus strand
chr3:7,994,492-8,653,610
(GRCh37/hg19)
Size:
659,119 bases
Orientation:
Minus strand

Genomic View for LMCD1-AS1 Gene

Genes around LMCD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LMCD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LMCD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMCD1-AS1 Gene

Proteins for LMCD1-AS1 Gene

Post-translational modifications for LMCD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LMCD1-AS1 Gene

Domains & Families for LMCD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LMCD1-AS1 Gene

Function for LMCD1-AS1 Gene

Phenotypes From GWAS Catalog for LMCD1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LMCD1-AS1 Gene

Localization for LMCD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LMCD1-AS1 Gene

Pathways & Interactions for LMCD1-AS1 Gene

SuperPathways for LMCD1-AS1 Gene

No Data Available

Interacting Proteins for LMCD1-AS1 Gene

Gene Ontology (GO) - Biological Process for LMCD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LMCD1-AS1 Gene

Drugs & Compounds for LMCD1-AS1 Gene

No Compound Related Data Available

Transcripts for LMCD1-AS1 Gene

mRNA/cDNA for LMCD1-AS1 Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Unigene Clusters for LMCD1-AS1 Gene

LMCD1 antisense RNA 1 (head to head):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LMCD1-AS1 Gene

No ASD Table

Relevant External Links for LMCD1-AS1 Gene

GeneLoc Exon Structure for
LMCD1-AS1
ECgene alternative splicing isoforms for
LMCD1-AS1

Expression for LMCD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LMCD1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for LMCD1-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x9.5) and Brain - Substantia nigra (x4.8).

SOURCE GeneReport for Unigene cluster for LMCD1-AS1 Gene:

Hs.651576
genes like me logo Genes that share expression patterns with LMCD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMCD1-AS1 Gene

Orthologs for LMCD1-AS1 Gene

Evolution for LMCD1-AS1 Gene

ENSEMBL:
Gene Tree for LMCD1-AS1 (if available)
TreeFam:
Gene Tree for LMCD1-AS1 (if available)

No data available for Orthologs for LMCD1-AS1 Gene

Paralogs for LMCD1-AS1 Gene

No data available for Paralogs for LMCD1-AS1 Gene

Variants for LMCD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for LMCD1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000048844 -- 8,229,307(-) T/A intron_variant
rs1000056139 -- 8,432,035(-) T/C intron_variant
rs1000069218 -- 8,270,127(-) T/A intron_variant
rs1000099881 -- 8,270,411(-) T/G intron_variant
rs1000101343 -- 8,236,114(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LMCD1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv998049 CNV gain 25217958
nsv834612 CNV loss 17160897
nsv820283 CNV loss 19587683
nsv589618 CNV loss 21841781
nsv589599 CNV loss 21841781
nsv589594 CNV loss 21841781
nsv589587 CNV loss 21841781
nsv513033 CNV loss 21212237
nsv513032 CNV loss 21212237
nsv511208 CNV loss 21212237
nsv473664 CNV novel sequence insertion 20440878
nsv3687 CNV insertion 18451855
nsv1143042 CNV tandem duplication 24896259
nsv1125768 CNV tandem duplication 24896259
nsv1114350 CNV deletion 24896259
nsv1072666 CNV deletion 25765185
nsv1011935 CNV loss 25217958
nsv1011096 CNV loss 25217958
nsv1007359 CNV loss 25217958
esv3595216 CNV loss 21293372
esv3595214 CNV loss 21293372
esv3595211 CNV loss 21293372
esv3561429 CNV deletion 23714750
esv3308624 CNV mobile element insertion 20981092
esv3304603 CNV mobile element insertion 20981092
esv32888 CNV loss 17666407
esv32855 CNV loss 17666407
esv29582 CNV loss 19812545
esv2838013 CNV deletion 24192839
esv27694 CNV gain+loss 19812545
esv2724874 CNV deletion 23290073
esv2724873 CNV deletion 23290073
esv2724871 CNV deletion 23290073
esv2724870 CNV deletion 23290073
esv2724869 CNV deletion 23290073
esv2724868 CNV deletion 23290073
esv2724867 CNV deletion 23290073
esv2667773 CNV deletion 23128226
esv2559340 CNV deletion 19546169
esv2397558 CNV deletion 18987734
esv1742263 CNV deletion 17803354
esv1478578 CNV deletion 17803354
esv1402188 CNV insertion 17803354
esv1328997 CNV deletion 17803354
esv1214601 CNV deletion 17803354
esv1131128 CNV deletion 17803354
esv1010150 CNV deletion 20482838
esv1006612 CNV loss 20482838
dgv847e199 CNV deletion 23128226
dgv8213n54 CNV gain 21841781
dgv8212n54 CNV loss 21841781
dgv8211n54 CNV gain+loss 21841781
dgv8210n54 CNV loss 21841781
dgv8209n54 CNV loss 21841781
dgv8208n54 CNV loss 21841781
dgv8207n54 CNV loss 21841781
dgv790n67 CNV loss 20364138
dgv4677n100 CNV gain 25217958
dgv2651e59 CNV duplication 20981092
dgv2650e59 CNV insertion 20981092
dgv2490n106 CNV deletion 24896259
dgv121n73 CNV deletion 24416366
dgv104e180 CNV loss 20482838

Additional Variant Information for LMCD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LMCD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LMCD1-AS1 Gene

Disorders for LMCD1-AS1 Gene

Additional Disease Information for LMCD1-AS1

No disorders were found for LMCD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMCD1-AS1 Gene

Publications for LMCD1-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 58
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 3 58

Products for LMCD1-AS1 Gene

Sources for LMCD1-AS1 Gene

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