Aliases for LLPH-DT Gene

Subcategory (RNA class) for LLPH-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LLPH-DT Gene

  • LLPH Divergent Transcript 2 3 5
  • LLPH Antisense RNA 1 (Head To Head) 2 3
  • LLPH-DT 2 168
  • NONHSAG011568 92
  • HSALNG0092036 167
  • LLPH-AS1 3

External Ids for LLPH-DT Gene

Previous HGNC Symbols for LLPH-DT Gene

  • LLPH-AS1

Summaries for LLPH-DT Gene

GeneCards Summary for LLPH-DT Gene

LLPH-DT (LLPH Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LLPH-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LLPH-DT Gene

Genomics for LLPH-DT Gene

GeneHancer (GH) Regulatory Elements for LLPH-DT Gene

Promoters and enhancers for LLPH-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J066129 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 550.6 +0.4 448 4 ZBTB40 ZNF217 SIN3A POLR2G PHF8 POLR2A CLOCK ZBTB11 GABPA SAP30 LLPH-DT LLPH IRAK3 HELB TMBIM4 piR-52438-028 ENSG00000228144
GH12J066128 Promoter 0.3 EPDnew 500.7 -1.7 -1734 0.1 LLPH LLPH-DT ENSG00000228144 RNA5SP362
GH12J066186 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 31 +58.8 58846 5.2 ZBTB40 USF1 RELA POLR2A BCL11A KLF9 USF2 PHF8 CHD1 NBN IRAK3 lnc-TMBIM4-5 LLPH-DT HELB LLPH ENSG00000256072 TMBIM4 RF00017-1174
GH12J066107 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 43.7 -22.4 -22408 2.7 EP300 CTCF REST RAD21 TRIM22 TEAD1 SMC3 ZNF266 CEBPB ZBTB17 LLPH-DT LLPH HMGA2 RPSAP52 LEMD3 HMGA2-AS1 TMBIM4 RNA5SP362
GH12J066142 Enhancer 1.1 Ensembl ENCODE dbSUPER 35.8 +14.2 14150 5.4 ZNF217 CTCF TEAD4 RAD21 TEAD1 CTBP1 FOXA2 NR2F2 ZNF316 SMC3 LLPH-DT TMBIM4 IRAK3 ENSG00000256072 HELB RPSAP52 piR-58156-022 ENSG00000228144 lnc-LLPH-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LLPH-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for LLPH-DT Gene

Genomic Locations for LLPH-DT Gene
chr12:66,130,751-66,134,631
(GRCh38/hg38)
Size:
3,881 bases
Orientation:
Plus strand
chr12:66,524,531-66,528,229
(GRCh37/hg19)
Size:
3,699 bases
Orientation:
Plus strand

Genomic View for LLPH-DT Gene

Genes around LLPH-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LLPH-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LLPH-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LLPH-DT Gene

Proteins for LLPH-DT Gene

Post-translational modifications for LLPH-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LLPH-DT Gene

Domains & Families for LLPH-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LLPH-DT Gene

Function for LLPH-DT Gene

Phenotypes From GWAS Catalog for LLPH-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LLPH-DT Gene

Localization for LLPH-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LLPH-DT Gene

Pathways & Interactions for LLPH-DT Gene

PathCards logo

SuperPathways for LLPH-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LLPH-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LLPH-DT Gene

Drugs & Compounds for LLPH-DT Gene

No Compound Related Data Available

Transcripts for LLPH-DT Gene

mRNA/cDNA for LLPH-DT Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LLPH-DT Gene

No ASD Table

Relevant External Links for LLPH-DT Gene

GeneLoc Exon Structure for
LLPH-DT

Expression for LLPH-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LLPH-DT Gene

Orthologs for LLPH-DT Gene

Evolution for LLPH-DT Gene

ENSEMBL:
Gene Tree for LLPH-DT (if available)
TreeFam:
Gene Tree for LLPH-DT (if available)

No data available for Orthologs for LLPH-DT Gene

Paralogs for LLPH-DT Gene

No data available for Paralogs for LLPH-DT Gene

Variants for LLPH-DT Gene

Additional dbSNP identifiers (rs#s) for LLPH-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for LLPH-DT Gene

Variant ID Type Subtype PubMed ID
dgv824n106 CNV deletion 24896259
esv1008035 CNV deletion 20482838
esv1009248 CNV deletion 20482838
esv1215925 CNV deletion 17803354
esv2318656 CNV deletion 18987734
esv2607781 CNV deletion 19546169
esv2746003 CNV deletion 23290073
esv3252051 CNV deletion 24192839
esv3549328 CNV deletion 23714750
esv3629796 CNV loss 21293372
esv3629797 CNV loss 21293372
esv3629798 CNV loss 21293372
esv5264 CNV loss 18987735
esv8872 CNV loss 19470904
nsv1068684 CNV deletion 25765185
nsv498795 CNV loss 21111241
nsv512280 CNV loss 21212237

Additional Variant Information for LLPH-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LLPH-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LLPH-DT Gene

Disorders for LLPH-DT Gene

Additional Disease Information for LLPH-DT

No disorders were found for LLPH-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LLPH-DT Gene

Publications for LLPH-DT Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LLPH-DT Gene

Products for LLPH-DT Gene

Sources for LLPH-DT Gene