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Aliases for LLPH-DT Gene

Subcategory (RNA class) for LLPH-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LLPH-DT Gene

  • LLPH Divergent Transcript 2 3
  • LLPH Antisense RNA 1 (Head To Head) 2 3 5
  • LLPH-AS1 3 5

External Ids for LLPH-DT Gene

Previous HGNC Symbols for LLPH-DT Gene

  • LLPH-AS1

Summaries for LLPH-DT Gene

GeneCards Summary for LLPH-DT Gene

LLPH-DT (LLPH Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LLPH-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LLPH-DT Gene

Genomics for LLPH-DT Gene

GeneHancer (GH) Regulatory Elements for LLPH-DT Gene

Promoters and enhancers for LLPH-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J066129 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 700.7 +0.7 677 3.5 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 YY1 POLR2B E2F8 ZNF207 ZNF143 LLPH-DT LLPH IRAK3 HELB TMBIM4 ENSG00000228144
GH12J066128 Promoter 0.5 EPDnew 650.7 -1.7 -1734 0.1 LLPH LLPH-DT ENSG00000228144 RNA5SP362
GH12J066186 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 30.7 +58.7 58652 4.8 RB1 RAD21 YY1 ZNF335 ZNF366 IKZF2 RUNX3 CREM USF2 SP1 IRAK3 LLPH-DT LLPH ENSG00000256072 TMBIM4 HELB PIR44949
GH12J066107 Enhancer 1 Ensembl ENCODE 42.8 -23.2 -23221 0.7 ELF3 ARID4B DMAP1 RAD21 RFX5 YY1 ZNF366 ZNF143 BCLAF1 THAP11 LLPH-DT LLPH HMGA2 RPSAP52 LEMD3 LOC100129940 RNA5SP362
GH12J066150 Enhancer 0.8 ENCODE dbSUPER 35.1 +19.7 19695 0.8 SMARCE1 CTCF TEAD4 CEBPB CEBPG ZEB2 DPF2 FOSL1 SKIL NFIC LLPH-DT IRAK3 ENSG00000256072 HELB TMBIM4 LLPH ENSG00000228144
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LLPH-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for LLPH-DT Gene

Genomic Locations for LLPH-DT Gene
chr12:66,130,751-66,134,449
(GRCh38/hg38)
Size:
3,699 bases
Orientation:
Plus strand
chr12:66,524,531-66,528,229
(GRCh37/hg19)
Size:
3,699 bases
Orientation:
Plus strand

Genomic View for LLPH-DT Gene

Genes around LLPH-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LLPH-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LLPH-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LLPH-DT Gene

Function for LLPH-DT Gene

Phenotypes From GWAS Catalog for LLPH-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LLPH-DT Gene

Localization for LLPH-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LLPH-DT Gene

Pathways & Interactions for LLPH-DT Gene

SuperPathways for LLPH-DT Gene

No Data Available

Interacting Proteins for LLPH-DT Gene

Gene Ontology (GO) - Biological Process for LLPH-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LLPH-DT Gene

Drugs & Compounds for LLPH-DT Gene

No Compound Related Data Available

Transcripts for LLPH-DT Gene

mRNA/cDNA for LLPH-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LLPH-DT Gene

No ASD Table

Relevant External Links for LLPH-DT Gene

GeneLoc Exon Structure for
LLPH-DT
ECgene alternative splicing isoforms for
LLPH-DT

Expression for LLPH-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LLPH-DT Gene

Orthologs for LLPH-DT Gene

Evolution for LLPH-DT Gene

ENSEMBL:
Gene Tree for LLPH-DT (if available)
TreeFam:
Gene Tree for LLPH-DT (if available)

No data available for Orthologs for LLPH-DT Gene

Paralogs for LLPH-DT Gene

No data available for Paralogs for LLPH-DT Gene

Variants for LLPH-DT Gene

Sequence variations from dbSNP and Humsavar for LLPH-DT Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000186151 -- 66,133,963(+) C/T intron_variant
rs1001007430 -- 66,130,683(+) A/C upstream_transcript_variant
rs1001411052 -- 66,129,566(+) T/C upstream_transcript_variant
rs1001671920 -- 66,130,386(+) C/G upstream_transcript_variant
rs1002120186 -- 66,129,201(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LLPH-DT Gene

Variant ID Type Subtype PubMed ID
nsv512280 CNV loss 21212237
nsv498795 CNV loss 21111241
nsv1068684 CNV deletion 25765185
esv8872 CNV loss 19470904
esv5264 CNV loss 18987735
esv3629798 CNV loss 21293372
esv3629797 CNV loss 21293372
esv3629796 CNV loss 21293372
esv3549328 CNV deletion 23714750
esv3252051 CNV deletion 24192839
esv2746003 CNV deletion 23290073
esv2607781 CNV deletion 19546169
esv2318656 CNV deletion 18987734
esv1215925 CNV deletion 17803354
esv1009248 CNV deletion 20482838
esv1008035 CNV deletion 20482838
dgv824n106 CNV deletion 24896259

Additional Variant Information for LLPH-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LLPH-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LLPH-DT Gene

Disorders for LLPH-DT Gene

Additional Disease Information for LLPH-DT

No disorders were found for LLPH-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LLPH-DT Gene

Publications for LLPH-DT Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LLPH-DT Gene

Sources for LLPH-DT Gene

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