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Aliases for LLPH-AS1 Gene

Subcategory (RNA class) for LLPH-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LLPH-AS1 Gene

  • LLPH Antisense RNA 1 (Head To Head) 2 3 5

External Ids for LLPH-AS1 Gene

Summaries for LLPH-AS1 Gene

GeneCards Summary for LLPH-AS1 Gene

LLPH-AS1 (LLPH Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LLPH-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LLPH-AS1 Gene

Genomics for LLPH-AS1 Gene

GeneHancer (GH) Regulatory Elements for LLPH-AS1 Gene

Promoters and enhancers for LLPH-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I066129 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.7 677 3.5 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 YY1 POLR2B E2F8 ZNF207 ZNF143 LLPH-AS1 LLPH HELB TMBIM4 ENSG00000228144
GH12I066186 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 30.7 +58.7 58652 4.8 RB1 RAD21 ZNF335 ZNF366 IKZF2 RUNX3 USF2 PRDM6 IKZF1 NBN IRAK3 LLPH-AS1 LLPH ENSG00000256072 TMBIM4 HELB PIR44949
GH12I066107 Enhancer 1 Ensembl ENCODE 42.8 -23.2 -23221 0.7 ELF3 ARID4B DMAP1 RAD21 RFX5 YY1 ZNF366 ZNF143 BCLAF1 THAP11 LLPH-AS1 LLPH HMGA2 RPSAP52 LEMD3 LOC100129940 RNA5SP362
GH12I066150 Enhancer 0.8 ENCODE dbSUPER 35.1 +19.7 19695 0.8 SMARCE1 CTCF TEAD4 CEBPB CEBPG ZEB2 DPF2 FOSL1 SKIL NFIC LLPH-AS1 IRAK3 ENSG00000256072 HELB TMBIM4 ENSG00000228144 LLPH
GH12I066092 Enhancer 0.7 Ensembl 37 -37.9 -37935 0.8 PKNOX1 ZNF133 MZF1 EBF1 FEZF1 BATF ZIC2 RELA POLR2A ZBTB48 LLPH-AS1 RNA5SP362
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LLPH-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LLPH-AS1 Gene

Genomic Locations for LLPH-AS1 Gene
chr12:66,130,751-66,134,449
(GRCh38/hg38)
Size:
3,699 bases
Orientation:
Plus strand
chr12:66,524,531-66,528,229
(GRCh37/hg19)

Genomic View for LLPH-AS1 Gene

Genes around LLPH-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LLPH-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LLPH-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LLPH-AS1 Gene

Proteins for LLPH-AS1 Gene

Post-translational modifications for LLPH-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LLPH-AS1 Gene

Domains & Families for LLPH-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LLPH-AS1 Gene

Function for LLPH-AS1 Gene

Phenotypes From GWAS Catalog for LLPH-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LLPH-AS1 Gene

Localization for LLPH-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LLPH-AS1 Gene

Pathways & Interactions for LLPH-AS1 Gene

SuperPathways for LLPH-AS1 Gene

No Data Available

Interacting Proteins for LLPH-AS1 Gene

Gene Ontology (GO) - Biological Process for LLPH-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LLPH-AS1 Gene

Drugs & Compounds for LLPH-AS1 Gene

No Compound Related Data Available

Transcripts for LLPH-AS1 Gene

mRNA/cDNA for LLPH-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LLPH-AS1 Gene

No ASD Table

Relevant External Links for LLPH-AS1 Gene

GeneLoc Exon Structure for
LLPH-AS1
ECgene alternative splicing isoforms for
LLPH-AS1

Expression for LLPH-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LLPH-AS1 Gene

genes like me logo Genes that share expression patterns with LLPH-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LLPH-AS1 Gene

Orthologs for LLPH-AS1 Gene

Evolution for LLPH-AS1 Gene

ENSEMBL:
Gene Tree for LLPH-AS1 (if available)
TreeFam:
Gene Tree for LLPH-AS1 (if available)

No data available for Orthologs for LLPH-AS1 Gene

Paralogs for LLPH-AS1 Gene

No data available for Paralogs for LLPH-AS1 Gene

Variants for LLPH-AS1 Gene

Sequence variations from dbSNP and Humsavar for LLPH-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000186151 -- 66,133,963(+) C/T intron_variant
rs1001007430 -- 66,130,683(+) A/C upstream_transcript_variant
rs1001411052 -- 66,129,566(+) T/C upstream_transcript_variant
rs1001671920 -- 66,130,386(+) C/G upstream_transcript_variant
rs1002120186 -- 66,129,201(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LLPH-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv824n106 CNV deletion 24896259
esv1008035 CNV deletion 20482838
esv1009248 CNV deletion 20482838
esv1215925 CNV deletion 17803354
esv2318656 CNV deletion 18987734
esv2607781 CNV deletion 19546169
esv2746003 CNV deletion 23290073
esv3252051 CNV deletion 24192839
esv3549328 CNV deletion 23714750
esv3629796 CNV loss 21293372
esv3629797 CNV loss 21293372
esv3629798 CNV loss 21293372
esv5264 CNV loss 18987735
esv8872 CNV loss 19470904
nsv1068684 CNV deletion 25765185
nsv498795 CNV loss 21111241
nsv512280 CNV loss 21212237

Additional Variant Information for LLPH-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LLPH-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LLPH-AS1 Gene

Disorders for LLPH-AS1 Gene

Additional Disease Information for LLPH-AS1

No disorders were found for LLPH-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LLPH-AS1 Gene

Publications for LLPH-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LLPH-AS1 Gene

Sources for LLPH-AS1 Gene

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