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Aliases for LL22NC03-63E9.3 Gene

Subcategory (RNA class) for LL22NC03-63E9.3 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LL22NC03-63E9.3 Gene

  • Uncharacterized LOC648691 3
  • Novel Transcript, Antisense To PRAME 5
  • AC246793.1 5

External Ids for LL22NC03-63E9.3 Gene

Summaries for LL22NC03-63E9.3 Gene

GeneCards Summary for LL22NC03-63E9.3 Gene

LL22NC03-63E9.3 (Uncharacterized LOC648691) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LL22NC03-63E9.3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LL22NC03-63E9.3 Gene

Genomics for LL22NC03-63E9.3 Gene

GeneHancer (GH) Regulatory Elements for LL22NC03-63E9.3 Gene

Promoters and enhancers for LL22NC03-63E9.3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J022558 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.2 -218 1.5 CTCF ZSCAN21 SP7 KLF14 GLIS2 POLR2A ZNF512 ZIC2 ZNF143 TRIM22 LL22NC03-63E9.3 PRAME LINC01659 PIR34503 IGL
GH22J022557 Promoter/Enhancer 0.7 Ensembl dbSUPER 600.7 -1.8 -1842 0.6 LL22NC03-63E9.3 PRAME PIR34503 IGL
GH22J022586 Promoter 1.2 Ensembl 12.5 +27.4 27358 0.6 CC2D1A CBFA2T2 MLLT1 SP7 RAD21 SMARCA4 MTA1 ARID2 DPF2 RNF2 IGLV2-33 TOP3B IGLV5-52 PPIL2 ENSG00000234630 ENSG00000272779 LL22NC03-63E9.3 PRAME IGLV2-28 IGLV3-27
GH22J022587 Enhancer 0.9 ENCODE 12.5 +27.8 27762 0.2 CC2D1A CTCF CBFA2T2 SP7 RAD21 SMARCA4 MTA1 ARID2 DPF2 PHF21A IGLV2-33 IGLV5-52 TOP3B PPIL2 PRAME LL22NC03-63E9.3 IGLV2-28 IGLV3-27 ENSG00000225544 ENSG00000234630
GH22J022589 Enhancer 0.3 Ensembl 12.5 +30.0 29958 0.2 TARDBP IGLV2-33 PRAME LL22NC03-63E9.3 IGLV3-27 IGLV2-28 POM121L1P IGLV3-32 IGL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LL22NC03-63E9.3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LL22NC03-63E9.3 Gene

Genomic Locations for LL22NC03-63E9.3 Gene
chr22:22,559,343-22,566,602
(GRCh38/hg38)
Size:
7,260 bases
Orientation:
Plus strand
chr22:22,901,750-22,909,007
(GRCh37/hg19)
Size:
7,258 bases
Orientation:
Plus strand

Genomic View for LL22NC03-63E9.3 Gene

Genes around LL22NC03-63E9.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LL22NC03-63E9.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LL22NC03-63E9.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LL22NC03-63E9.3 Gene

Proteins for LL22NC03-63E9.3 Gene

Post-translational modifications for LL22NC03-63E9.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LL22NC03-63E9.3 Gene

Domains & Families for LL22NC03-63E9.3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LL22NC03-63E9.3 Gene

Function for LL22NC03-63E9.3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LL22NC03-63E9.3 Gene

Localization for LL22NC03-63E9.3 Gene

Gene Ontology (GO) - Cellular Components for LL22NC03-63E9.3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035068 micro-ribonucleoprotein complex IEA --
genes like me logo Genes that share ontologies with LL22NC03-63E9.3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LL22NC03-63E9.3 Gene

Pathways & Interactions for LL22NC03-63E9.3 Gene

PathCards logo

SuperPathways for LL22NC03-63E9.3 Gene

No Data Available

Interacting Proteins for LL22NC03-63E9.3 Gene

Gene Ontology (GO) - Biological Process for LL22NC03-63E9.3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IEA --
genes like me logo Genes that share ontologies with LL22NC03-63E9.3: view

No data available for Pathways by source and SIGNOR curated interactions for LL22NC03-63E9.3 Gene

Drugs & Compounds for LL22NC03-63E9.3 Gene

No Compound Related Data Available

Transcripts for LL22NC03-63E9.3 Gene

mRNA/cDNA for LL22NC03-63E9.3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LL22NC03-63E9.3 Gene

No ASD Table

Relevant External Links for LL22NC03-63E9.3 Gene

GeneLoc Exon Structure for
LL22NC03-63E9.3

Expression for LL22NC03-63E9.3 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LL22NC03-63E9.3 Gene

Orthologs for LL22NC03-63E9.3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LL22NC03-63E9.3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 92 (a)
OneToOne
Species where no ortholog for LL22NC03-63E9.3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LL22NC03-63E9.3 Gene

ENSEMBL:
Gene Tree for LL22NC03-63E9.3 (if available)
TreeFam:
Gene Tree for LL22NC03-63E9.3 (if available)

Paralogs for LL22NC03-63E9.3 Gene

No data available for Paralogs for LL22NC03-63E9.3 Gene

Variants for LL22NC03-63E9.3 Gene

Sequence variations from dbSNP and Humsavar for LL22NC03-63E9.3 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000888209 -- 22,562,478(+) G/C/T intron_variant
rs1001340148 -- 22,562,238(+) C/G intron_variant
rs1001425615 -- 22,560,419(+) C/G intron_variant
rs1001558502 -- 22,557,433(+) G/A upstream_transcript_variant
rs1001665600 -- 22,566,516(+) C/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LL22NC03-63E9.3 Gene

Variant ID Type Subtype PubMed ID
dgv38n64 CNV loss 17921354
dgv39n64 CNV loss 17921354
dgv4505n100 CNV loss 25217958
dgv4506n100 CNV loss 25217958
dgv4507n100 CNV loss 25217958
dgv4510n100 CNV loss 25217958
dgv4511n100 CNV gain 25217958
dgv4512n100 CNV loss 25217958
dgv548n27 CNV loss 19166990
dgv550n27 CNV loss 19166990
dgv551n27 CNV loss 19166990
dgv555n27 CNV loss 19166990
dgv557n27 CNV loss 19166990
dgv558n27 CNV loss 19166990
dgv560n27 CNV loss 19166990
dgv731n67 CNV loss 20364138
dgv8004n54 CNV loss 21841781
dgv8005n54 CNV loss 21841781
dgv8010n54 CNV loss 21841781
dgv8012n54 CNV loss 21841781
dgv8014n54 CNV loss 21841781
dgv8015n54 CNV loss 21841781
dgv826e214 CNV loss 21293372
esv1007524 CNV gain 20482838
esv2199435 CNV deletion 18987734
esv2422480 CNV deletion 17116639
esv2621638 CNV deletion 19546169
esv2637176 CNV loss 19546169
esv2658046 CNV deletion 23128226
esv3568289 CNV loss 25503493
esv3568290 CNV loss 25503493
esv3647369 CNV loss 21293372
esv3647370 CNV loss 21293372
nsv1060145 CNV gain 25217958
nsv1063128 CNV gain+loss 25217958
nsv433337 CNV loss 18776910
nsv438338 CNV loss 16468122
nsv459421 CNV gain 19166990
nsv459539 CNV loss 19166990
nsv469742 CNV gain+loss 16826518
nsv472380 CNV novel sequence insertion 20440878
nsv475090 CNV novel sequence insertion 20440878
nsv514963 CNV gain+loss 21397061
nsv526328 CNV gain 19592680
nsv588348 CNV gain 21841781
nsv588469 CNV loss 21841781
nsv588472 CNV loss 21841781
nsv588484 CNV loss 21841781
nsv588491 CNV gain+loss 21841781
nsv588498 CNV gain 21841781
nsv7350 OTHER inversion 18451855
nsv817937 CNV loss 17921354
nsv817957 CNV gain 17921354
nsv819428 CNV gain 19587683
nsv821694 CNV loss 15273396
nsv828977 CNV loss 20364138
nsv828979 CNV gain+loss 20364138
nsv834150 CNV loss 17160897

Variation tolerance for LL22NC03-63E9.3 Gene

Gene Damage Index Score: 2.68; 46.05% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Additional Variant Information for LL22NC03-63E9.3 Gene

Disorders for LL22NC03-63E9.3 Gene

No disorders were found for LL22NC03-63E9.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LL22NC03-63E9.3 Gene

Publications for LL22NC03-63E9.3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LL22NC03-63E9.3 Gene

Products for LL22NC03-63E9.3 Gene

Sources for LL22NC03-63E9.3 Gene

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