Aliases for LL22NC01-81G9.3 Gene

Subcategory (RNA class) for LL22NC01-81G9.3 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LL22NC01-81G9.3 Gene

  • Uncharacterized Protein FLJ39582-Like 3
  • Novel Transcript 5
  • NONHSAG033851.2 91
  • HSALNG0135262 164
  • Lnc-CSF2RB-1 165
  • Z82180.1 5

External Ids for LL22NC01-81G9.3 Gene

Previous GeneCards Identifiers for LL22NC01-81G9.3 Gene

  • GC22P037363

Summaries for LL22NC01-81G9.3 Gene

GeneCards Summary for LL22NC01-81G9.3 Gene

LL22NC01-81G9.3 (Uncharacterized Protein FLJ39582-Like) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LL22NC01-81G9.3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LL22NC01-81G9.3 Gene

Genomics for LL22NC01-81G9.3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LL22NC01-81G9.3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J036961 Enhancer 1 FANTOM5 Ensembl ENCODE 0.7 +3.0 2951 9 ZNF512 ZFX ARNT SP2 FOXA1 FOXA2 USF1 SPI1 ZNF366 ATF2 NCF4 TEX33 NCF4-AS1 PVALB ENSG00000234979 ENSG00000229971 CSF2RB CYTH4 RAC2 LL22NC01-81G9.3
GH22J036976 Promoter/Enhancer 1.3 ENCODE CraniofacialAtlas 0.4 +13.7 13735 1.8 SP1 CREB1 GATAD2A CTCF ZNF629 ZNF512 ZNF692 JUND STAT3 GABPA piR-50437-441 MPST TEX33 LL22NC01-81G9.3 CSF2RB
GH22J036973 Enhancer 0.2 Ensembl 0.4 +9.6 9551 0.2 LL22NC01-81G9.3 piR-50437-441 TEX33 CSF2RB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LL22NC01-81G9.3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LL22NC01-81G9.3 Gene

Genomic Locations for LL22NC01-81G9.3 Gene
chr22:36,964,150-36,968,204
(GRCh38/hg38)
Size:
4,055 bases
Orientation:
Plus strand
chr22:37,361,289-37,364,213
(GRCh37/hg19)
Size:
2,925 bases
Orientation:
Plus strand

Genomic View for LL22NC01-81G9.3 Gene

Genes around LL22NC01-81G9.3 on UCSC Golden Path with GeneCards custom track
LL22NC01-81G9.3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LL22NC01-81G9.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LL22NC01-81G9.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LL22NC01-81G9.3 Gene

Proteins for LL22NC01-81G9.3 Gene

Post-translational modifications for LL22NC01-81G9.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LL22NC01-81G9.3 Gene

Domains & Families for LL22NC01-81G9.3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LL22NC01-81G9.3 Gene

Function for LL22NC01-81G9.3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LL22NC01-81G9.3 Gene

Localization for LL22NC01-81G9.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LL22NC01-81G9.3 Gene

Pathways & Interactions for LL22NC01-81G9.3 Gene

PathCards logo

SuperPathways for LL22NC01-81G9.3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LL22NC01-81G9.3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LL22NC01-81G9.3 Gene

Drugs & Compounds for LL22NC01-81G9.3 Gene

No Compound Related Data Available

Transcripts for LL22NC01-81G9.3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LL22NC01-81G9.3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000041ECDF_9606 lncRNA 992 5

RefSeq: NR_038954,

Ensembl: ENST00000400221 (view in UCSC) ,

LncBook: HSALNT0277597,

LNCipedia: lnc-CSF2RB-1:1,

NONCODE: NONHSAT085136.2,

URS0000E94555_9606 lncRNA 1495 1

LncBook: HSALNT0277596,

LL22NC01-81G9.3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LL22NC01-81G9.3 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LL22NC01-81G9.3 Gene

No ASD Table

Relevant External Links for LL22NC01-81G9.3 Gene

GeneLoc Exon Structure for
LL22NC01-81G9.3

Expression for LL22NC01-81G9.3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LL22NC01-81G9.3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LL22NC01-81G9.3

genes like me logo Genes that share expression patterns with LL22NC01-81G9.3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LL22NC01-81G9.3 Gene

Orthologs for LL22NC01-81G9.3 Gene

Evolution for LL22NC01-81G9.3 Gene

ENSEMBL:
Gene Tree for LL22NC01-81G9.3 (if available)
TreeFam:
Gene Tree for LL22NC01-81G9.3 (if available)

No data available for Orthologs for LL22NC01-81G9.3 Gene

Paralogs for LL22NC01-81G9.3 Gene

No data available for Paralogs for LL22NC01-81G9.3 Gene

Variants for LL22NC01-81G9.3 Gene

Additional dbSNP identifiers (rs#s) for LL22NC01-81G9.3 Gene

Structural Variations from Database of Genomic Variants (DGV) for LL22NC01-81G9.3 Gene

Variant ID Type Subtype PubMed ID
esv34015 CNV loss 18971310
nsv459882 CNV gain 19166990
nsv588984 CNV gain 21841781
nsv834187 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LL22NC01-81G9.3 Gene

Disorders for LL22NC01-81G9.3 Gene

Additional Disease Information for LL22NC01-81G9.3

No disorders were found for LL22NC01-81G9.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LL22NC01-81G9.3 Gene

Publications for LL22NC01-81G9.3 Gene

No publications were found for LL22NC01-81G9.3 Gene.

No data available for Mastermind for LL22NC01-81G9.3 Gene

Products for LL22NC01-81G9.3 Gene

Sources for LL22NC01-81G9.3 Gene