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Aliases for LL22NC01-81G9.3 Gene

Subcategory (RNA class) for LL22NC01-81G9.3 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LL22NC01-81G9.3 Gene

  • Uncharacterized Protein FLJ39582-Like 3 5

External Ids for LL22NC01-81G9.3 Gene

Previous GeneCards Identifiers for LL22NC01-81G9.3 Gene

  • GC22P037363

Summaries for LL22NC01-81G9.3 Gene

GeneCards Summary for LL22NC01-81G9.3 Gene

LL22NC01-81G9.3 (Uncharacterized Protein FLJ39582-Like) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LL22NC01-81G9.3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LL22NC01-81G9.3 Gene

Genomics for LL22NC01-81G9.3 Gene

GeneHancer (GH) Regulatory Elements for LL22NC01-81G9.3 Gene

Promoters and enhancers for LL22NC01-81G9.3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I036976 Enhancer 1.2 Ensembl ENCODE 0.4 +12.6 12637 1.8 PKNOX1 ATF1 ARID4B IRF4 YY1 GLIS2 ELK1 ZNF207 ZNF143 ATF7 MPST TEX33 LL22NC01-81G9.3
GH22I036969 Enhancer 0.4 FANTOM5 ENCODE 0.8 +4.6 4632 0.2 NCF4 NCF4-AS1 TEX33 ENSG00000229971 CSF2RB CYTH4 RAC2 LL22NC01-81G9.3
GH22I036982 Enhancer 0.8 ENCODE 0.4 +17.1 17107 0.2 HDAC1 ARNT TCF12 GATA2 NCOA1 NFIC KLF16 SMARCA4 IKZF1 KDM1A LL22NC01-81G9.3 TEX33
GH22I037007 Promoter 0.6 EPDnew 0.3 +42.6 42583 0.1 RFX1 TEX33 LL22NC01-81G9.3
GH22I037000 Enhancer 0.5 ENCODE 0.3 +33.9 33867 0.2 FOSL1 CTCF JUND MAZ PATZ1 FOS ENSG00000231467 TMPRSS6 NCF4 IL2RB ENSG00000229971 TEX33 LL22NC01-81G9.3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LL22NC01-81G9.3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LL22NC01-81G9.3 Gene

Genomic Locations for LL22NC01-81G9.3 Gene
chr22:36,965,248-36,968,172
(GRCh38/hg38)
Size:
2,925 bases
Orientation:
Plus strand
chr22:37,361,289-37,364,213
(GRCh37/hg19)

Genomic View for LL22NC01-81G9.3 Gene

Genes around LL22NC01-81G9.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LL22NC01-81G9.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LL22NC01-81G9.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LL22NC01-81G9.3 Gene

Proteins for LL22NC01-81G9.3 Gene

Post-translational modifications for LL22NC01-81G9.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LL22NC01-81G9.3 Gene

Domains & Families for LL22NC01-81G9.3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LL22NC01-81G9.3 Gene

Function for LL22NC01-81G9.3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LL22NC01-81G9.3 Gene

Localization for LL22NC01-81G9.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LL22NC01-81G9.3 Gene

Pathways & Interactions for LL22NC01-81G9.3 Gene

SuperPathways for LL22NC01-81G9.3 Gene

No Data Available

Interacting Proteins for LL22NC01-81G9.3 Gene

Gene Ontology (GO) - Biological Process for LL22NC01-81G9.3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LL22NC01-81G9.3 Gene

Drugs & Compounds for LL22NC01-81G9.3 Gene

No Compound Related Data Available

Transcripts for LL22NC01-81G9.3 Gene

mRNA/cDNA for LL22NC01-81G9.3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LL22NC01-81G9.3 Gene

No ASD Table

Relevant External Links for LL22NC01-81G9.3 Gene

GeneLoc Exon Structure for
LL22NC01-81G9.3

Expression for LL22NC01-81G9.3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LL22NC01-81G9.3 Gene

genes like me logo Genes that share expression patterns with LL22NC01-81G9.3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LL22NC01-81G9.3 Gene

Orthologs for LL22NC01-81G9.3 Gene

Evolution for LL22NC01-81G9.3 Gene

ENSEMBL:
Gene Tree for LL22NC01-81G9.3 (if available)
TreeFam:
Gene Tree for LL22NC01-81G9.3 (if available)

No data available for Orthologs for LL22NC01-81G9.3 Gene

Paralogs for LL22NC01-81G9.3 Gene

No data available for Paralogs for LL22NC01-81G9.3 Gene

Variants for LL22NC01-81G9.3 Gene

Sequence variations from dbSNP and Humsavar for LL22NC01-81G9.3 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000430743 -- 36,964,346(+) G/T upstream_transcript_variant
rs1001921299 -- 36,963,868(+) G/A upstream_transcript_variant
rs1002994702 -- 36,965,021(+) A/T upstream_transcript_variant
rs1003584644 -- 36,966,401(+) G/A non_coding_transcript_variant
rs1003941055 -- 36,966,640(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LL22NC01-81G9.3 Gene

Variant ID Type Subtype PubMed ID
nsv834187 CNV loss 17160897
nsv588984 CNV gain 21841781
nsv459882 CNV gain 19166990
esv34015 CNV loss 18971310

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LL22NC01-81G9.3 Gene

Disorders for LL22NC01-81G9.3 Gene

Additional Disease Information for LL22NC01-81G9.3

No disorders were found for LL22NC01-81G9.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LL22NC01-81G9.3 Gene

Publications for LL22NC01-81G9.3 Gene

No publications were found for LL22NC01-81G9.3 Gene.

Products for LL22NC01-81G9.3 Gene

Sources for LL22NC01-81G9.3 Gene

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