Aliases for LIVAR Gene

Subcategory (RNA class) for LIVAR Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LIVAR Gene

  • Liver Cell Viability Associated LncRNA 2 3 5
  • LIVAR 2 5 165
  • Lnc18q22.2 2 3
  • NONHSAG024117.2 91
  • NONHSAG024118.2 91
  • HSALNG0122284 164
  • Lnc-RTTN-2 165

External Ids for LIVAR Gene

Summaries for LIVAR Gene

GeneCards Summary for LIVAR Gene

LIVAR (Liver Cell Viability Associated LncRNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LIVAR include Non-Alcoholic Fatty Liver Disease.

Additional gene information for LIVAR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LIVAR Gene

Genomics for LIVAR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LIVAR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J070331 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +3.1 3079 8.2 GATAD2A ATF7 TFE3 NFKBIZ RCOR2 JUND FOXA1 PHF21A RBFOX2 PKNOX1 LINC01909 LIVAR piR-50444-205 lnc-DOK6-3 SOCS6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LIVAR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LIVAR Gene

Genomic Locations for LIVAR Gene
chr18:70,335,319-70,338,180
(GRCh38/hg38)
Size:
2,862 bases
Orientation:
Minus strand

Genomic View for LIVAR Gene

Genes around LIVAR on UCSC Golden Path with GeneCards custom track
LIVAR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LIVAR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIVAR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIVAR Gene

Proteins for LIVAR Gene

No data available for DME Specific Peptides for LIVAR Gene

Domains & Families for LIVAR Gene

Gene Families for LIVAR Gene

genes like me logo Genes that share domains with LIVAR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LIVAR Gene

Function for LIVAR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIVAR Gene

Localization for LIVAR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LIVAR Gene

Pathways & Interactions for LIVAR Gene

PathCards logo

SuperPathways for LIVAR Gene

No Data Available

Gene Ontology (GO) - Biological Process for LIVAR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LIVAR Gene

Drugs & Compounds for LIVAR Gene

No Compound Related Data Available

Transcripts for LIVAR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LIVAR Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004B5B7A_9606 lncRNA 384 3

Ensembl: ENST00000578633 (view in UCSC) ,

LNCipedia: LIVAR:5,

NONCODE: NONHSAT059771.2,

URS0000BC4538_9606 lncRNA 1675 2

HGNC: 53130,

RefSeq: NR_146458,

URS00008BE0DB_9606 lncRNA 206 3

LncBook: HSALNT0252730,

LNCipedia: lnc-RTTN-2:1,

NONCODE: NONHSAT059773.2,

URS0000E99B24_9606 lncRNA 1438 1

LncBook: HSALNT0252719,

URS0000D58AFF_9606 lncRNA 373 1

LNCipedia: LIVAR:7,

LIVAR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LIVAR Gene

No ASD Table

Relevant External Links for LIVAR Gene

GeneLoc Exon Structure for
LIVAR

No data available for mRNA/cDNA for LIVAR Gene

Expression for LIVAR Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LIVAR

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LIVAR Gene

Orthologs for LIVAR Gene

Evolution for LIVAR Gene

ENSEMBL:
Gene Tree for LIVAR (if available)
TreeFam:
Gene Tree for LIVAR (if available)

No data available for Orthologs for LIVAR Gene

Paralogs for LIVAR Gene

No data available for Paralogs for LIVAR Gene

Variants for LIVAR Gene

Additional dbSNP identifiers (rs#s) for LIVAR Gene

Additional Variant Information for LIVAR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LIVAR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LIVAR Gene

Disorders for LIVAR Gene

MalaCards: The human disease database

(1) MalaCards diseases for LIVAR Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
non-alcoholic fatty liver disease
  • nafld
- elite association - COSMIC cancer census association via MalaCards
Search LIVAR in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with LIVAR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LIVAR Gene

Publications for LIVAR Gene

  1. A liver-specific long noncoding RNA with a role in cell viability is elevated in human nonalcoholic steatohepatitis. (PMID: 28073183) Atanasovska B … Fu J (Hepatology (Baltimore, Md.) 2017) 2 3

Products for LIVAR Gene

Sources for LIVAR Gene