Aliases for LITAFD Gene

Aliases for LITAFD Gene

  • LITAF Domain Containing 2 3 5
  • LITAF Domain-Containing Protein 3 4
  • LITAF-Like Protein 3 4

External Ids for LITAFD Gene

Summaries for LITAFD Gene

GeneCards Summary for LITAFD Gene

LITAFD (LITAF Domain Containing) is a Protein Coding gene.

Additional gene information for LITAFD Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LITAFD Gene

Genomics for LITAFD Gene

GeneHancer (GH) Regulatory Elements for LITAFD Gene

Promoters and enhancers for LITAFD Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J008880 Enhancer 1.2 FANTOM5 Ensembl ENCODE 750.6 +0.2 234 1.8 MIXL1 HLF ZNF121 ELF3 CEBPG ZNF384 ZNF24 CEBPA GATAD2A RXRB LITAFD ENSG00000260979 HSALNG0109430
GH16J008881 Enhancer 1.1 Ensembl ENCODE dbSUPER 750.6 -1.2 -1234 0.8 CTCF RBPJ CC2D1A RAD21 ELF3 ZNF384 ARID2 RXRA REST ZBTB8A LITAFD HSALNG0109430 ENSG00000261481
GH16J008883 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.6 +3.6 3559 3.8 ZBTB6 RBPJ SMARCE1 POLR2A L3MBTL2 ZNF652 ZKSCAN8 CEBPG SP7 SMARCA4 ENSG00000260979 HSALNG0109430 LITAFD
GH16J008877 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.6 -3.1 -3106 2.6 HLF ELF3 CEBPG SP7 IKZF1 CEBPA SMARCC1 GATAD2A ZNF629 PATZ1 LITAFD ENSG00000261481 HSALNG0109430
GH16J008890 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 +11.0 10994 3.7 ZNF24 SP1 ETV6 RELA RAD21 POLR2A MLLT1 ZNF687 CREM ZBED1 C16orf72 CARHSP1 METTL22 USP7 lnc-CARHSP1-2 HSALNG0109430 LITAFD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LITAFD on UCSC Golden Path with GeneCards custom track

Genomic Locations for LITAFD Gene

Genomic Locations for LITAFD Gene
chr16:8,881,634-8,892,650
(GRCh38/hg38)
Size:
11,017 bases
Orientation:
Plus strand

Genomic View for LITAFD Gene

Genes around LITAFD on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LITAFD Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LITAFD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LITAFD Gene

Proteins for LITAFD Gene

  • Protein details for LITAFD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GVX0-LITAD_HUMAN
    Recommended name:
    LITAF domain-containing protein
    Protein Accession:
    A0A1B0GVX0

    Protein attributes for LITAFD Gene

    Size:
    72 amino acids
    Molecular mass:
    8245 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LITAFD Gene

Post-translational modifications for LITAFD Gene

No Post-translational modifications

Other Protein References for LITAFD Gene

No data available for DME Specific Peptides for LITAFD Gene

Domains & Families for LITAFD Gene

Protein Domains for LITAFD Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A0A1B0GVX0

UniProtKB/Swiss-Prot:

LITAD_HUMAN :
  • The LITAF domain is stabilized by a bound zinc ion. The LITAF domain contains an amphiphatic helix that mediates interaction with lipid membranes.
  • Belongs to the CDIP1/LITAF family.
Domain:
  • The LITAF domain is stabilized by a bound zinc ion. The LITAF domain contains an amphiphatic helix that mediates interaction with lipid membranes.
Family:
  • Belongs to the CDIP1/LITAF family.
genes like me logo Genes that share domains with LITAFD: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for LITAFD Gene

Function for LITAFD Gene

Gene Ontology (GO) - Molecular Function for LITAFD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with LITAFD: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LITAFD Gene

Localization for LITAFD Gene

Subcellular locations from UniProtKB/Swiss-Prot for LITAFD Gene

Membrane; Peripheral membrane protein.

Gene Ontology (GO) - Cellular Components for LITAFD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with LITAFD: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LITAFD Gene

Pathways & Interactions for LITAFD Gene

PathCards logo

SuperPathways for LITAFD Gene

No Data Available

Interacting Proteins for LITAFD Gene

Gene Ontology (GO) - Biological Process for LITAFD Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LITAFD Gene

Drugs & Compounds for LITAFD Gene

No Compound Related Data Available

Transcripts for LITAFD Gene

mRNA/cDNA for LITAFD Gene

(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LITAFD Gene

No ASD Table

Relevant External Links for LITAFD Gene

GeneLoc Exon Structure for
LITAFD
ECgene alternative splicing isoforms for
LITAFD

Expression for LITAFD Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LITAFD Gene

Orthologs for LITAFD Gene

Evolution for LITAFD Gene

ENSEMBL:
Gene Tree for LITAFD (if available)
TreeFam:
Gene Tree for LITAFD (if available)

No data available for Orthologs for LITAFD Gene

Paralogs for LITAFD Gene

No data available for Paralogs for LITAFD Gene

Variants for LITAFD Gene

Sequence variations from dbSNP and Humsavar for LITAFD Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000334851 -- 8,885,322(+) G/A/C 3_prime_UTR_variant, intron_variant
rs1000430711 -- 8,880,970(+) T/C upstream_transcript_variant
rs1000577178 -- 8,881,268(+) G/A upstream_transcript_variant
rs1000861818 -- 8,887,406(+) G/A genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1001018315 -- 8,883,504(+) C/G intron_variant

Additional Variant Information for LITAFD Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LITAFD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LITAFD Gene

Disorders for LITAFD Gene

No disorders were found for LITAFD Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LITAFD Gene

Publications for LITAFD Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 56

No data available for External Links for LITAFD Gene

Products for LITAFD Gene

Sources for LITAFD Gene