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Aliases for LINCMD1 Gene

Subcategory (RNA class) for LINCMD1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINCMD1 Gene

  • Long Intergenic Non-Protein Coding RNA, Muscle Differentiation 1 2 3 5
  • MIR133B Host Gene (Non-Protein Coding) 2 3
  • Long Noncoding RNA, Muscle Differentiation 1 3
  • MIR133BHG 3
  • LINC-MD1 3

External Ids for LINCMD1 Gene

Previous HGNC Symbols for LINCMD1 Gene

  • MIR133BHG
  • LINC-MD1

Previous GeneCards Identifiers for LINCMD1 Gene

  • GC06U902314

Summaries for LINCMD1 Gene

GeneCards Summary for LINCMD1 Gene

LINCMD1 (Long Intergenic Non-Protein Coding RNA, Muscle Differentiation 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINCMD1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINCMD1 Gene

Genomics for LINCMD1 Gene

GeneHancer (GH) Regulatory Elements for LINCMD1 Gene

Promoters and enhancers for LINCMD1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I052150 Enhancer 0.7 dbSUPER 550.8 -0.9 -933 3.1 MEIS2 PKNOX1 ATF1 ETV1 ZNF366 NR2F6 CREM NRF1 ELF1 GABPA LINCMD1 GC06P052155
GH06I052063 Enhancer 1 Ensembl ENCODE 10.1 +87.4 87369 1.2 CTCF ATF1 ETV1 SIN3A CEBPG E4F1 ZBTB40 RAD21 IRF9 ELK1 PKHD1 MIR133B LINCMD1 IL17F SLC25A20P1 GC06P052010
GH06I052317 Enhancer 1.1 Ensembl ENCODE dbSUPER 9.1 -167.4 -167446 1.7 EBF1 CEBPG BATF IRF4 TEAD3 FOSL1 ZNF121 ZNF143 RCOR1 ATF7 PAQR8 MCM3 LINCMD1 MIR133B GC06M052308
GH06I052263 Enhancer 0.7 ENCODE 10.4 -112.8 -112799 0.2 CTCF RB1 ZNF48 RAD21 RFX5 SMC3 ZNF143 NR2F6 BCLAF1 CHD2 LINCMD1 MIR133B PKHD1 MIR206 IL17A PIR36045 SLC25A20P1
GH06I052116 Enhancer 0.6 ENCODE dbSUPER 11.7 +34.6 34601 0.9 GLIS1 FEZF1 LINCMD1 MIR133B PKHD1 MIR206 GC06P052124
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINCMD1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINCMD1 Gene

Genomic Locations for LINCMD1 Gene
chr6:52,146,814-52,151,119
(GRCh38/hg38)
Size:
4,306 bases
Orientation:
Minus strand

Genomic View for LINCMD1 Gene

Genes around LINCMD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINCMD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINCMD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINCMD1 Gene

Proteins for LINCMD1 Gene

Post-translational modifications for LINCMD1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINCMD1 Gene

Domains & Families for LINCMD1 Gene

Gene Families for LINCMD1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINCMD1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINCMD1 Gene

Function for LINCMD1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINCMD1 Gene

Localization for LINCMD1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINCMD1 Gene

Pathways & Interactions for LINCMD1 Gene

SuperPathways for LINCMD1 Gene

No Data Available

Interacting Proteins for LINCMD1 Gene

Gene Ontology (GO) - Biological Process for LINCMD1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINCMD1 Gene

Drugs & Compounds for LINCMD1 Gene

No Compound Related Data Available

Transcripts for LINCMD1 Gene

mRNA/cDNA for LINCMD1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINCMD1 Gene

No ASD Table

Relevant External Links for LINCMD1 Gene

GeneLoc Exon Structure for
LINCMD1
ECgene alternative splicing isoforms for
LINCMD1

Expression for LINCMD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINCMD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINCMD1 Gene:

LINCMD1
genes like me logo Genes that share expression patterns with LINCMD1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINCMD1 Gene

Orthologs for LINCMD1 Gene

Evolution for LINCMD1 Gene

ENSEMBL:
Gene Tree for LINCMD1 (if available)
TreeFam:
Gene Tree for LINCMD1 (if available)

No data available for Orthologs for LINCMD1 Gene

Paralogs for LINCMD1 Gene

No data available for Paralogs for LINCMD1 Gene

Variants for LINCMD1 Gene

Sequence variations from dbSNP and Humsavar for LINCMD1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000442664 -- 52,148,508(-) A/G intron_variant
rs1000878717 -- 52,148,719(-) T/A intron_variant
rs1001483709 -- 52,150,437(-) T/G intron_variant
rs1001776191 -- 52,152,536(-) C/T upstream_transcript_variant
rs1001808613 -- 52,152,153(-) G/A upstream_transcript_variant

Additional Variant Information for LINCMD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINCMD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINCMD1 Gene

Disorders for LINCMD1 Gene

Additional Disease Information for LINCMD1

No disorders were found for LINCMD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINCMD1 Gene

Publications for LINCMD1 Gene

  1. A feedforward regulatory loop between HuR and the long noncoding RNA linc-MD1 controls early phases of myogenesis. (PMID: 24440503) Legnini I … Bozzoni I (Molecular cell 2014) 2 3 58
  2. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. (PMID: 22000014) Cesana M … Bozzoni I (Cell 2011) 2 3 58
  3. Long noncoding RNA uc.338 promotes cell proliferation through association with BMI1 in hepatocellular carcinoma. (PMID: 27154519) Bo C … An Y (Human cell 2016) 3 58
  4. Genome-wide profiling of long noncoding ribonucleic acid expression patterns in ovarian endometriosis by microarray. (PMID: 24502888) Sun PR … Lang JH (Fertility and sterility 2014) 3 58
  5. Genome-wide analysis of long noncoding RNA expression in peripheral blood mononuclear cells of uremia patients. (PMID: 23100179) Sui W … Dai Y (Journal of nephrology 2013) 3 58

Products for LINCMD1 Gene

Sources for LINCMD1 Gene

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