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Aliases for LINC2194 Gene

Subcategory (RNA class) for LINC2194 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC2194 Gene

  • Long Intergenic Non-Protein Coding RNA 2194 2 3 5

External Ids for LINC2194 Gene

Summaries for LINC2194 Gene

GeneCards Summary for LINC2194 Gene

LINC2194 (Long Intergenic Non-Protein Coding RNA 2194) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC2194 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC2194 Gene

Genomics for LINC2194 Gene

GeneHancer (GH) Regulatory Elements for LINC2194 Gene

Promoters and enhancers for LINC2194 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J025108 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 14.6 +874.8 874778 3.7 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS KLF13 SP3 LCMT1 LCMT1-AS1 RBBP6 ARHGAP17 LINC02191 LINC2194 LOC100420641 LCMT1-AS2 HMGN2P3 LOC100421173
GH16J025047 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14.6 +814.3 814264 5.3 HDGF PKNOX1 SMAD1 ARNT ZFP64 SIN3A FEZF1 ZNF2 YY1 POLR2B RBBP6 HMGN2P3 ENSG00000261669 LOC554206 ARHGAP17 LCMT1-AS2 LINC02191 LOC100420641 LINC2194 LOC100421169
GH16J024253 Enhancer 0.7 ENCODE 0.4 +17.3 17262 0.2 CTCF ZNF654 TRIM22 MIER2 REST ZNF2 RAD21 ATF2 ZFHX2 FOXK2 CACNG3 LINC2194
GH16J024208 Enhancer 0.3 ENCODE 0.3 -27.3 -27264 0.7 EZH2 GC16M024208 ENSG00000279554 LINC2194 PRKCB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC2194 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC2194 Gene

Genomic Locations for LINC2194 Gene
chr16:24,236,053-24,252,863
(GRCh38/hg38)
Size:
16,811 bases
Orientation:
Plus strand
chr16:24,247,425-24,264,184
(GRCh37/hg19)
Size:
16,760 bases
Orientation:
Plus strand

Genomic View for LINC2194 Gene

Genes around LINC2194 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC2194 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC2194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC2194 Gene

Function for LINC2194 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC2194 Gene

Localization for LINC2194 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC2194 Gene

Pathways & Interactions for LINC2194 Gene

SuperPathways for LINC2194 Gene

No Data Available

Interacting Proteins for LINC2194 Gene

Gene Ontology (GO) - Biological Process for LINC2194 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC2194 Gene

Drugs & Compounds for LINC2194 Gene

No Compound Related Data Available

Transcripts for LINC2194 Gene

mRNA/cDNA for LINC2194 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC2194 Gene

No ASD Table

Relevant External Links for LINC2194 Gene

GeneLoc Exon Structure for
LINC2194
ECgene alternative splicing isoforms for
LINC2194

Expression for LINC2194 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC2194 Gene

Orthologs for LINC2194 Gene

Evolution for LINC2194 Gene

ENSEMBL:
Gene Tree for LINC2194 (if available)
TreeFam:
Gene Tree for LINC2194 (if available)

No data available for Orthologs for LINC2194 Gene

Paralogs for LINC2194 Gene

No data available for Paralogs for LINC2194 Gene

Variants for LINC2194 Gene

Sequence variations from dbSNP and Humsavar for LINC2194 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000357830 -- 24,241,516(+) T/C intron_variant
rs1000377725 -- 24,239,653(+) A/G intron_variant
rs1000482965 -- 24,245,256(+) G/A intron_variant
rs1000595107 -- 24,251,178(+) G/A intron_variant
rs1000739412 -- 24,243,158(+) C/T intron_variant

Additional Variant Information for LINC2194 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC2194

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC2194 Gene

Disorders for LINC2194 Gene

Additional Disease Information for LINC2194

No disorders were found for LINC2194 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC2194 Gene

Publications for LINC2194 Gene

No publications were found for LINC2194 Gene.

Products for LINC2194 Gene

Sources for LINC2194 Gene

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