Aliases for LINC02915 Gene

RNA type for LINC02915 Gene

lncRNA

Aliases for LINC02915 Gene

External Ids for LINC02915 Gene

Previous HGNC Symbols for LINC02915 Gene

  • C15orf54

Summaries for LINC02915 Gene

GeneCards Summary for LINC02915 Gene

LINC02915 (Long Intergenic Non-Protein Coding RNA 2915) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02915 Gene

Genomics for LINC02915 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02915 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02915 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02915 Gene

Latest Assembly
chr15:39,250,669-39,254,845
(GRCh38/hg38)
Size:
4,177 bases
Orientation:
Plus strand

Previous Assembly
chr15:39,542,870-39,547,046
(GRCh37/hg19 by Entrez Gene)
Size:
4,177 bases
Orientation:
Plus strand

chr15:39,542,885-39,547,046
(GRCh37/hg19 by Ensembl)
Size:
4,162 bases
Orientation:
Plus strand

Genomic View for LINC02915 Gene

Genes around LINC02915 on UCSC Golden Path with GeneCards custom track
LINC02915 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02915 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02915 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02915 Gene

Proteins for LINC02915 Gene

  • Protein details for LINC02915 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N8G6-CO054_HUMAN
    Recommended name:
    Putative uncharacterized protein C15orf54
    Protein Accession:
    Q8N8G6
    Secondary Accessions:
    • B7ZVZ9

    Protein attributes for LINC02915 Gene

    Size:
    183 amino acids
    Molecular mass:
    21040 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC02915 Gene

Post-translational modifications for LINC02915 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC02915 Gene

Domains & Families for LINC02915 Gene

Gene Families for LINC02915 Gene

genes like me logo Genes that share domains with LINC02915: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02915 Gene

Function for LINC02915 Gene

Phenotypes From GWAS Catalog for LINC02915 Gene

genes like me logo Genes that share phenotypes with LINC02915: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02915 Gene

Localization for LINC02915 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02915 gene
Compartment Confidence
mitochondrion 1
nucleus 1
endoplasmic reticulum 1
cytosol 1
golgi apparatus 1
plasma membrane 0
peroxisome 0

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02915 Gene

Pathways & Interactions for LINC02915 Gene

PathCards logo

SuperPathways for LINC02915 Gene

No Data Available

Interacting Proteins for LINC02915 Gene

Selected Interacting proteins: Q8N8G6-CO054_HUMAN for LINC02915 Gene via IID

Symbol External ID(s) Details
CRKL

Gene Ontology (GO) - Biological Process for LINC02915 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02915 Gene

Drugs & Compounds for LINC02915 Gene

No Compound Related Data Available

Transcripts for LINC02915 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02915 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007DCAD8_9606 lncRNA 3080 2

Ensembl: ENST00000625107 (view in UCSC) ,

LNCipedia: lnc-C15orf53-7:1,

URS00007E11DB_9606 lncRNA 955 2

Ensembl: ENST00000561223 (view in UCSC) ,

LNCipedia: lnc-C15orf53-7:2,

URS0000A76D14_9606 lncRNA 3090 1

RefSeq: NR_144507,

URS0000A76928_9606 lncRNA 2979 1

RefSeq: NR_144508,

LINC02915 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02915 Gene

2 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02915

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02915 Gene

No ASD Table

Relevant External Links for LINC02915 Gene

GeneLoc Exon Structure for
LINC02915

Expression for LINC02915 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02915

SOURCE GeneReport for Unigene cluster for LINC02915 Gene:

Hs.376109
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02915 Gene

Orthologs for LINC02915 Gene

This gene was present in the common ancestor of mammals.

Orthologs for LINC02915 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C15H15orf54 29
  • 97.81 (n)
Dog
(Canis familiaris)
Mammalia C30H15orf54 29
  • 85.42 (n)
Species where no ortholog for LINC02915 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02915 Gene

ENSEMBL:
Gene Tree for LINC02915 (if available)
TreeFam:
Gene Tree for LINC02915 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02915

Paralogs for LINC02915 Gene

No data available for Paralogs for LINC02915 Gene

Variants for LINC02915 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02915 Gene

SNP ID Clinical significance and condition Chr 15 pos Variation AA Info Type
rs11853050 -- p.Thr59Met
rs16968547 -- p.Glu77Lys

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02915 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02915 Gene

Variant ID Type Subtype PubMed ID
esv3569465 CNV gain 25503493
esv3892676 CNV loss 25118596
esv3892677 CNV gain 25118596
nsv569212 CNV gain 21841781

Variation tolerance for LINC02915 Gene

Residual Variation Intolerance Score: 68.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.37; 27.10% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02915 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02915
Leiden Open Variation Database (LOVD)
LINC02915

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC02915 Gene

Disorders for LINC02915 Gene

Additional Disease Information for LINC02915

No disorders were found for LINC02915 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02915 Gene

Publications for LINC02915 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3
  3. Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. (PMID: 23934736) Yu B … Boerwinkle E (Genetic epidemiology 2013) 3
  4. Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality. (PMID: 21348951) Parsa A … Liggett SB (Clinical and translational science 2011) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4

No data available for Mastermind for LINC02915 Gene

Products for LINC02915 Gene

Sources for LINC02915 Gene