Aliases for LINC02913 Gene

Data sources for LINC02913 Gene:

RNA type for LINC02913 Gene

lncRNA

Aliases for LINC02913 Gene

External Ids for LINC02913 Gene

Previous HGNC Symbols for LINC02913 Gene

  • C9orf106

Summaries for LINC02913 Gene

GeneCards Summary for LINC02913 Gene

LINC02913 (Long Intergenic Non-Protein Coding RNA 2913) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02913 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02913 Gene

Genomics for LINC02913 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02913 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J129317 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -0.2 -194 7.2 SIX5 CEBPA YY1 MXD4 CTCF REST KLF11 ETS1 TBP ZNF217 ENSG00000179082 HSALNG0074717 LINC02913 IER5L ENSG00000204055 ENSG00000273186 SH3GLB2 RF00017-7383 NTMT1
GH09J129314 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.4 -5.3 -5277 2.6 CEBPA ZNF10 YY1 CEBPB THAP11 ZNF623 RXRA ZNF511 SAP130 RARA CERCAM ENSG00000179082 LINC02913 RF00017-7383 IER5L NTMT1
GH09J129315 Enhancer 0.3 Ensembl dbSUPER 0.4 -6.7 -6715 0.2 ENSG00000179082 LINC02913 RF00017-7383 IER5L NTMT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02913 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02913

Genomic Locations for LINC02913 Gene

Latest Assembly
chr9:129,321,016-129,322,603
(GRCh38/hg38)
Size:
1,588 bases
Orientation:
Plus strand

Previous Assembly
chr9:132,083,295-132,084,882
(GRCh37/hg19 by Entrez Gene)
Size:
1,588 bases
Orientation:
Plus strand

Genomic View for LINC02913 Gene

Genes around LINC02913 on UCSC Golden Path with GeneCards custom track
LINC02913 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02913 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02913 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02913 Gene

Proteins for LINC02913 Gene

  • Protein details for LINC02913 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAJ2-CI106_HUMAN
    Recommended name:
    Putative uncharacterized protein C9orf106
    Protein Accession:
    Q8NAJ2

    Protein attributes for LINC02913 Gene

    Size:
    232 amino acids
    Molecular mass:
    25113 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC02913 Gene

Post-translational modifications for LINC02913 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02913 Gene

Domains & Families for LINC02913 Gene

Gene Families for LINC02913 Gene

Suggested Antigen Peptide Sequences for LINC02913 Gene

GenScript: Design optimal peptide antigens:
  • Chromosome 9 open reading frame 106 (A2RU00_HUMAN)
genes like me logo Genes that share domains with LINC02913: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02913 Gene

Function for LINC02913 Gene

Phenotypes From GWAS Catalog for LINC02913 Gene

Phenotypes for LINC02913 Gene

genes like me logo Genes that share phenotypes with LINC02913: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02913 Gene

Localization for LINC02913 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02913 Gene

Pathways & Interactions for LINC02913 Gene

PathCards logo

SuperPathways for LINC02913 Gene

No Data Available

Interacting Proteins for LINC02913 Gene

Selected Interacting proteins: Q8NAJ2-CI106_HUMAN for LINC02913 Gene via IID

Gene Ontology (GO) - Biological Process for LINC02913 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02913 Gene

Drugs & Compounds for LINC02913 Gene

No Compound Related Data Available

Transcripts for LINC02913 Gene

LINC02913 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

mRNA/cDNA for LINC02913 Gene

3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02913

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02913 Gene

No ASD Table

Relevant External Links for LINC02913 Gene

GeneLoc Exon Structure for
LINC02913

Expression for LINC02913 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02913

SOURCE GeneReport for Unigene cluster for LINC02913 Gene:

Hs.449434
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02913 Gene

Orthologs for LINC02913 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02913 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C9H9orf106 29
  • 98.85 (n)
Species where no ortholog for LINC02913 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

No data available for Evolution for LINC02913 Gene

Paralogs for LINC02913 Gene

No data available for Paralogs for LINC02913 Gene

Variants for LINC02913 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02913 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02913 Gene

Variant ID Type Subtype PubMed ID
nsv527231 CNV loss 19592680
nsv6726 CNV insertion 18451855

Additional Variant Information for LINC02913 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02913
Leiden Open Variation Database (LOVD)
LINC02913

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02913 Gene

Disorders for LINC02913 Gene

Additional Disease Information for LINC02913

No disorders were found for LINC02913 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02913 Gene

Publications for LINC02913 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02913 Gene

Products for LINC02913 Gene

Sources for LINC02913 Gene