Aliases for LINC02905 Gene

RNA type for LINC02905 Gene

lncRNA

Aliases for LINC02905 Gene

External Ids for LINC02905 Gene

Previous HGNC Symbols for LINC02905 Gene

  • C8orf49

Summaries for LINC02905 Gene

GeneCards Summary for LINC02905 Gene

LINC02905 (Long Intergenic Non-Protein Coding RNA 2905) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02905 Gene

Genomics for LINC02905 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02905 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02905 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02905 Gene

Latest Assembly
chr8:11,761,255-11,763,224
(GRCh38/hg38)
Size:
1,970 bases
Orientation:
Plus strand

Previous Assembly
chr8:11,618,765-11,620,733
(GRCh37/hg19 by Entrez Gene)
Size:
1,969 bases
Orientation:
Plus strand

chr8:11,618,896-11,620,309
(GRCh37/hg19 by Ensembl)
Size:
1,414 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):1,584,854-1,586,827 (-)

Genomic View for LINC02905 Gene

Genes around LINC02905 on UCSC Golden Path with GeneCards custom track
LINC02905 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02905 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02905 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02905 Gene

Proteins for LINC02905 Gene

  • Protein details for LINC02905 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NF6-CH049_HUMAN
    Recommended name:
    Putative uncharacterized protein C8orf49
    Protein Accession:
    Q96NF6

    Protein attributes for LINC02905 Gene

    Size:
    230 amino acids
    Molecular mass:
    25558 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC02905 Gene

Post-translational modifications for LINC02905 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02905 Gene

Domains & Families for LINC02905 Gene

Gene Families for LINC02905 Gene

Suggested Antigen Peptide Sequences for LINC02905 Gene

GenScript: Design optimal peptide antigens:
  • Chromosome 8 open reading frame 49 (A2RUK8_HUMAN)
genes like me logo Genes that share domains with LINC02905: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02905 Gene

Function for LINC02905 Gene

Phenotypes From GWAS Catalog for LINC02905 Gene

genes like me logo Genes that share phenotypes with LINC02905: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02905 Gene

Localization for LINC02905 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LINC02905 Gene

Membrane. Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for LINC02905 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LINC02905: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LINC02905 Gene

Pathways & Interactions for LINC02905 Gene

PathCards logo

SuperPathways for LINC02905 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02905 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02905 Gene

Drugs & Compounds for LINC02905 Gene

No Compound Related Data Available

Transcripts for LINC02905 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02905 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075EBF3_9606 lncRNA 1968 3

Ensembl: ENST00000525043 (view in UCSC) ,

LNCipedia: lnc-GATA4-1:3,

NONCODE: NONHSAT125071.2,

URS0000A83015_9606 lncRNA 1415 2

Ensembl: ENST00000625198 (view in UCSC) ,

LNCipedia: lnc-GATA4-1:4,

URS0002123184_9606 lncRNA 1969 1

RefSeq: NR_171032,

URS00008B9BFE_9606 lncRNA 800 1

LNCipedia: lnc-GATA4-1:5,

LINC02905 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02905 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02905

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02905 Gene

No ASD Table

Relevant External Links for LINC02905 Gene

GeneLoc Exon Structure for
LINC02905

Expression for LINC02905 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02905

SOURCE GeneReport for Unigene cluster for LINC02905 Gene:

Hs.545529
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02905 Gene

Orthologs for LINC02905 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02905 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C8orf49 30
  • 92 (a)
OneToOne
Species where no ortholog for LINC02905 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02905 Gene

ENSEMBL:
Gene Tree for LINC02905 (if available)
TreeFam:
Gene Tree for LINC02905 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02905

Paralogs for LINC02905 Gene

No data available for Paralogs for LINC02905 Gene

Variants for LINC02905 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02905 Gene

SNP ID Clinical significance and condition Chr 08 pos Variation AA Info Type
rs13281294 -- p.Arg95Gly
rs804285 -- p.Arg26Gly
rs809204 -- p.Ile81Val

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02905 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Variation tolerance for LINC02905 Gene

Gene Damage Index Score: 5.77; 73.53% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02905 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02905
Leiden Open Variation Database (LOVD)
LINC02905

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC02905 Gene

Disorders for LINC02905 Gene

Additional Disease Information for LINC02905

No disorders were found for LINC02905 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02905 Gene

Publications for LINC02905 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. Genetic analysis of the promoter region of the GATA4 gene in patients with ventricular septal defects. (PMID: 22500510) Wu G … Yan B (Translational research : the journal of laboratory and clinical medicine 2012) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02905 Gene

Products for LINC02905 Gene

Sources for LINC02905 Gene