Aliases for LINC02884 Gene

Subcategory (RNA class) for LINC02884 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02884 Gene

  • Long Intergenic Non-Protein Coding RNA 2884 2 3
  • Novel Transcript 5
  • NONHSAG002430.2 91
  • HSALNG0006094 164
  • AL445426.1 5
  • Lnc-ST7L-2 165

External Ids for LINC02884 Gene

Summaries for LINC02884 Gene

GeneCards Summary for LINC02884 Gene

LINC02884 (Long Intergenic Non-Protein Coding RNA 2884) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02884 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02884 Gene

Genomics for LINC02884 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02884 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J112358 Promoter/Enhancer 1.2 FANTOM5 Ensembl ENCODE 605.6 +1.3 1275 4.4 CTCF TEAD4 NFKBIZ ZNF143 REST RAD21 SP1 TRIM22 CEBPB FOXA2 LINC02884 CTTNBP2NL KCND3 OVGP1 piR-54592-022
GH01J112393 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 4.9 -35.3 -35323 6.4 SP1 CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 IKZF1 ZNF692 FOS CTTNBP2NL lnc-ST7L-9 lnc-WNT2B-2 LRIG2 ST7L ENSG00000243960 WNT2B LINC02884 lnc-CTTNBP2NL-2
GH01J111534 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5 +824.9 824928 2.5 GATAD2A SOX13 RBFOX2 RXRB SP1 FOXK2 ETS1 ZBTB26 FOXA2 YY1 TMIGD3 ADORA3 RNU6-151P KRT18P57 LINC02884 RAP1A piR-31162-029 lnc-RAP1A-1
GH01J112231 Enhancer 0.3 Ensembl 4.4 +128.8 128777 0.6 RAD21 CTCF piR-39192 LINC02884 piR-47086-010 CTTNBP2NL KCND3
GH01J112318 Enhancer 1 Ensembl ENCODE 0.3 +42.2 42177 4.2 JUND ZNF24 ZNF740 BRD9 HDAC1 SOX6 EP300 MGA GTF2E2 ZNF766 LRIG2 ENSG00000243960 ST7L ENSG00000238761 piR-54592-022 LINC02884 CTTNBP2NL KCND3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02884 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02884 Gene

Genomic Locations for LINC02884 Gene
chr1:112,176,973-112,360,678
(GRCh38/hg38)
Size:
183,706 bases
Orientation:
Minus strand
chr1:112,719,856-112,903,150
(GRCh37/hg19)
Size:
183,295 bases
Orientation:
Minus strand

Genomic View for LINC02884 Gene

Genes around LINC02884 on UCSC Golden Path with GeneCards custom track
LINC02884 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02884 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02884 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02884 Gene

Proteins for LINC02884 Gene

Post-translational modifications for LINC02884 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02884 Gene

Domains & Families for LINC02884 Gene

Gene Families for LINC02884 Gene

genes like me logo Genes that share domains with LINC02884: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02884 Gene

Function for LINC02884 Gene

Phenotypes From GWAS Catalog for LINC02884 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02884 Gene

Localization for LINC02884 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02884 Gene

Pathways & Interactions for LINC02884 Gene

PathCards logo

SuperPathways for LINC02884 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02884 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02884 Gene

Drugs & Compounds for LINC02884 Gene

No Compound Related Data Available

Transcripts for LINC02884 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02884 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000381123_9606 lncRNA 547 3

Ensembl: ENST00000427290 (view in UCSC) ,

LNCipedia: lnc-ST7L-2:1,

NONCODE: NONHSAT005224.2,

URS0000EEDA87_9606 lncRNA 5603 1

Ensembl: ENST00000659549 (view in UCSC) ,

URS0000EF0646_9606 lncRNA 1462 1

Ensembl: ENST00000658120 (view in UCSC) ,

URS0000EEB2FC_9606 lncRNA 732 1

Ensembl: ENST00000654472 (view in UCSC) ,

URS0000EF4DD8_9606 lncRNA 489 1

Ensembl: ENST00000663553 (view in UCSC) ,

LINC02884 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02884 Gene

No ASD Table

Relevant External Links for LINC02884 Gene

GeneLoc Exon Structure for
LINC02884

No data available for mRNA/cDNA for LINC02884 Gene

Expression for LINC02884 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02884 Gene

Orthologs for LINC02884 Gene

Evolution for LINC02884 Gene

ENSEMBL:
Gene Tree for LINC02884 (if available)
TreeFam:
Gene Tree for LINC02884 (if available)

No data available for Orthologs for LINC02884 Gene

Paralogs for LINC02884 Gene

No data available for Paralogs for LINC02884 Gene

Variants for LINC02884 Gene

Additional dbSNP identifiers (rs#s) for LINC02884 Gene

Additional Variant Information for LINC02884 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02884

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02884 Gene

Disorders for LINC02884 Gene

No disorders were found for LINC02884 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02884 Gene

Publications for LINC02884 Gene

No publications were found for LINC02884 Gene.

No data available for Mastermind for LINC02884 Gene

Products for LINC02884 Gene

Sources for LINC02884 Gene