Aliases for LINC02882 Gene

Data sources for LINC02882 Gene:

RNA type for LINC02882 Gene

lncRNA

Aliases for LINC02882 Gene

External Ids for LINC02882 Gene

Summaries for LINC02882 Gene

GeneCards Summary for LINC02882 Gene

LINC02882 (Long Intergenic Non-Protein Coding RNA 2882) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02882 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02882 Gene

Genomics for LINC02882 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02882 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J074536 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.7 -136.8 -136801 6 BCLAF1 ZNF654 IKZF1 ZNF600 ZNF580 ZNF592 POLR2A NFIC CHD4 YY1 ATXN7L3B ENSG00000257386 LINC02882 GLIPR1 piR-32325-041 HSALNG0092434 KCNC2
GH12J074508 Enhancer 0.6 ENCODE 10.4 -106.4 -106436 0.2 ZNF217 FOXA2 YY1 SIN3A EP400 FOXA1 TAF1 EGR1 ZFP69B KLF1 piR-33432-126 LINC02882 ATXN7L3B HSALNG0092434
GH12J074543 Enhancer 0.2 Ensembl 9.9 -140.6 -140601 0.4 LINC02882 ENSG00000257386 ATXN7L3B piR-32325-041 HSALNG0092434 KCNC2
GH12J074338 Enhancer 0.6 Ensembl ENCODE 0.2 +64.4 64400 0.4 JUND FOSL2 FOS EP300 ATXN7L3B ENSG00000257183 LOC107987178 VENTXP3 LINC02882 HSALNG0092434
GH12J074317 Enhancer 0.5 Ensembl 0.2 +85.5 85499 0.2 ZNF654 REST CTCF RAD21 ARID2 LOC107987178 VENTXP3 HSALNG0092434 LINC02882 ATXN7L3B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02882 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02882 Gene

Latest Assembly
chr12:73,211,411-74,402,600
(GRCh38/hg38)
Size:
1,191,190 bases
Orientation:
Minus strand

Previous Assembly
chr12:74,526,953-74,686,411
(GRCh37/hg19 by Entrez Gene)
Size:
159,459 bases
Orientation:
Minus strand

chr12:74,526,946-74,796,315
(GRCh37/hg19 by Ensembl)
Size:
269,370 bases
Orientation:
Minus strand

Genomic View for LINC02882 Gene

Genes around LINC02882 on UCSC Golden Path with GeneCards custom track
LINC02882 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02882 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02882 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02882 Gene

Proteins for LINC02882 Gene

Post-translational modifications for LINC02882 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02882 Gene

Domains & Families for LINC02882 Gene

Gene Families for LINC02882 Gene

genes like me logo Genes that share domains with LINC02882: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02882 Gene

Function for LINC02882 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02882 Gene

Localization for LINC02882 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02882 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02882 Gene

Pathways & Interactions for LINC02882 Gene

PathCards logo

SuperPathways for LINC02882 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02882 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02882 Gene

Drugs & Compounds for LINC02882 Gene

No Compound Related Data Available

Transcripts for LINC02882 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02882 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000331A84_9606 lncRNA 839 4

Ensembl: ENST00000548427 (view in UCSC) ,

LncBook: HSALNT0191515,

LNCipedia: lnc-KCNC2-2:3,

NONCODE: NONHSAT029507.2,

URS000056F818_9606 lncRNA 748 3

Ensembl: ENST00000549905 (view in UCSC) ,

LNCipedia: lnc-KCNC2-2:4,

NONCODE: NONHSAT029496.2,

URS00000BD897_9606 lncRNA 469 3

Ensembl: ENST00000551210 (view in UCSC) ,

LNCipedia: lnc-KCNC2-2:7,

NONCODE: NONHSAT029506.2,

URS0000EEF1DF_9606 lncRNA 3857 1

Ensembl: ENST00000668665 (view in UCSC) ,

URS0000EF5FD6_9606 lncRNA 3720 1

Ensembl: ENST00000670471 (view in UCSC) ,

LINC02882 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02882 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02882 Gene

No ASD Table

Relevant External Links for LINC02882 Gene

GeneLoc Exon Structure for
LINC02882

Expression for LINC02882 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02882

SOURCE GeneReport for Unigene cluster for LINC02882 Gene:

Hs.738728
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02882 Gene

Orthologs for LINC02882 Gene

Evolution for LINC02882 Gene

ENSEMBL:
Gene Tree for LINC02882 (if available)
TreeFam:
Gene Tree for LINC02882 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02882

No data available for Orthologs for LINC02882 Gene

Paralogs for LINC02882 Gene

No data available for Paralogs for LINC02882 Gene

Variants for LINC02882 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02882 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02882 Gene

Variant ID Type Subtype PubMed ID
dgv1528n100 CNV loss 25217958
dgv2715n54 CNV loss 21841781
dgv2716n54 CNV loss 21841781
dgv2717n54 CNV loss 21841781
dgv2718n54 CNV loss 21841781
dgv2719n54 CNV loss 21841781
dgv296n67 CNV loss 20364138
esv2660066 CNV deletion 23128226
esv2667329 CNV deletion 23128226
esv2676409 CNV deletion 23128226
esv2746077 CNV deletion 23290073
esv2746078 CNV deletion 23290073
esv2746079 CNV deletion 23290073
esv2746080 CNV deletion 23290073
esv27957 CNV loss 19812545
esv3549413 CNV deletion 23714750
esv3549414 CNV deletion 23714750
esv3629979 CNV loss 21293372
esv3629983 CNV loss 21293372
esv3629984 CNV loss 21293372
esv3629985 CNV loss 21293372
esv3892224 CNV loss 25118596
nsv1051702 CNV gain 25217958
nsv1134240 CNV deletion 24896259
nsv469470 CNV loss 19166990
nsv469472 CNV loss 19166990
nsv469473 CNV loss 19166990
nsv470302 CNV gain 18288195
nsv520257 CNV gain 19592680
nsv523765 CNV gain 19592680
nsv559392 CNV loss 21841781
nsv559397 CNV gain 21841781
nsv559408 CNV gain 21841781
nsv559409 CNV loss 21841781
nsv559411 CNV loss 21841781
nsv559412 CNV loss 21841781
nsv775 CNV insertion 18451855
nsv826437 CNV loss 20364138
nsv983488 CNV deletion 23825009

Additional Variant Information for LINC02882 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02882
Leiden Open Variation Database (LOVD)
LINC02882

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02882 Gene

Disorders for LINC02882 Gene

Additional Disease Information for LINC02882

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02882 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02882 Gene

Publications for LINC02882 Gene

  1. RP11-81H3.2 Acts as an Oncogene via microRNA-490-3p Inhibition and Consequential Tankyrase 2 Up-Regulation in Hepatocellular Carcinoma. (PMID: 31858324) Chen W … Dang CX (Digestive diseases and sciences 2020) 2 3
  2. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02882 Gene

Products for LINC02882 Gene

Sources for LINC02882 Gene