LINC02881 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2881

GC10P044293
GIFtS:
14
See more...

Aliases for LINC02881 Gene

Data sources for LINC02881 Gene:

Subcategory (RNA class) for LINC02881 Gene

lncRNA

Aliases for LINC02881 Gene

External Ids for LINC02881 Gene

Previous HGNC Symbols for LINC02881 Gene

  • C10orf142

Summaries for LINC02881 Gene

GeneCards Summary for LINC02881 Gene

LINC02881 (Long Intergenic Non-Protein Coding RNA 2881) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02881 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02881 Gene

Genomics for LINC02881 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02881 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J044293 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.3 1252 3.1 MLLT1 JUND TAF1 IKZF1 HDGF HLF EZH2 IKZF2 ZNF239 ZNF311 ENSG00000229116 LINC02881 ZNF32-AS2 CXCL12 CEP164P1 HSALNG0077608 LOC107984189
GH10J044280 Enhancer 0.4 Ensembl ENCODE 0.4 -11.6 -11571 1.6 MNT lnc-CXCL12-6 CXCL12 LINC02881 HSALNG0077608 LOC107984189
GH10J044286 Enhancer 0.2 Ensembl 0.4 -5.2 -5170 1.8 CXCL12 ENSG00000229116 lnc-CXCL12-6 LINC02881 HSALNG0077608 LOC107984189
GH10J044282 Enhancer 0.2 Ensembl 0.4 -10.4 -10370 0.2 CXCL12 lnc-CXCL12-6 LINC02881 HSALNG0077608 LOC107984189
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02881 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02881

Genomic Locations for LINC02881 Gene

Latest Assembly
chr10:44,292,471-44,294,649
(GRCh38/hg38)
Size:
2,179 bases
Orientation:
Plus strand

Previous Assembly
chr10:44,788,198-44,790,097
(GRCh37/hg19 by Entrez Gene)
Size:
1,900 bases
Orientation:
Plus strand

Genomic View for LINC02881 Gene

Genes around LINC02881 on UCSC Golden Path with GeneCards custom track
LINC02881 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02881 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02881 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02881 Gene

Proteins for LINC02881 Gene

Products:

  1. Antibodies for research
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  3. Assay products for research

  • Protein details for LINC02881 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B7Z368-CJ142_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC02881
    Protein Accession:
    B7Z368

    Protein attributes for LINC02881 Gene

    Size:
    130 amino acids
    Molecular mass:
    13757 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC02881 Gene

Post-translational modifications for LINC02881 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC02881 Gene

Domains & Families for LINC02881 Gene

Gene Families for LINC02881 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for LINC02881 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with LINC02881: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02881 Gene

Function for LINC02881 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for LINC02881 Gene

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02881

Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02881 Gene

Localization for LINC02881 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02881 Gene

Pathways & Interactions for LINC02881 Gene

PathCards logo

SuperPathways for LINC02881 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02881 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02881 Gene

Drugs & Compounds for LINC02881 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC02881 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02881 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007BE1A3_9606 lncRNA 1110 2

RefSeq: NR_164139,

Ensembl: ENST00000649743 (view in UCSC) ,

URS00008BA9DF_9606 lncRNA 596 1

NONCODE: NONHSAT013029.2,

LINC02881 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02881 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02881

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02881 Gene

No ASD Table

Relevant External Links for LINC02881 Gene

GeneLoc Exon Structure for
LINC02881

Expression for LINC02881 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02881 Gene

Orthologs for LINC02881 Gene

Evolution for LINC02881 Gene

ENSEMBL:
Gene Tree for LINC02881 (if available)
TreeFam:
Gene Tree for LINC02881 (if available)

No data available for Orthologs for LINC02881 Gene

Paralogs for LINC02881 Gene

Pseudogenes.org Pseudogenes for LINC02881 Gene

genes like me logo Genes that share paralogs with LINC02881: view

No data available for Paralogs for LINC02881 Gene

Variants for LINC02881 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02881 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02881 Gene

Variant ID Type Subtype PubMed ID
nsv1038511 CNV loss 25217958
nsv1068305 CNV deletion 25765185
nsv1126250 CNV deletion 24896259
nsv483001 CNV loss 15286789
nsv508579 CNV deletion 20534489

Additional Variant Information for LINC02881 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02881

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02881 Gene

Disorders for LINC02881 Gene

Additional Disease Information for LINC02881

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for LINC02881 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02881 Gene

Publications for LINC02881 Gene

  1. Genomewide association analysis of coronary artery disease. (PMID: 17634449) Samani NJ … WTCCC and the Cardiogenics Consortium (The New England journal of medicine 2007) 3
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4

No data available for Mastermind for LINC02881 Gene

Products for LINC02881 Gene

Sources for LINC02881 Gene