Aliases for LINC02877 Gene

Subcategory (RNA class) for LINC02877 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02877 Gene

  • Long Intergenic Non-Protein Coding RNA 2877 2 3
  • Chromosome 3 Open Reading Frame 79 2 5
  • C3orf79 3 5
  • HSALNG0029936 167
  • NONHSAG036432 92
  • Lnc-RAP2B-12 168
  • LINC02083 168
  • LINC02877 2

External Ids for LINC02877 Gene

Previous HGNC Symbols for LINC02877 Gene

  • C3orf79

Summaries for LINC02877 Gene

GeneCards Summary for LINC02877 Gene

LINC02877 (Long Intergenic Non-Protein Coding RNA 2877) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02877 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02877 Gene

Genomics for LINC02877 Gene

GeneHancer (GH) Regulatory Elements for LINC02877 Gene

Promoters and enhancers for LINC02877 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J153430 Enhancer 0.2 Ensembl 500.7 -0.7 -655 1.2 LINC02877 ENSG00000244268 RAP2B RF00017-4144 LINC02006
GH03J153451 Enhancer 0.2 Ensembl 11.6 +20.3 20345 0.4 LINC02877 RF00026-747 RNU6-901P LINC02006
GH03J153437 Enhancer 0.4 Ensembl 0.4 +6.8 6845 2.2 EP300 CTCF POLR2A RAD21 ENSG00000244268 RAP2B LINC02877 RF00026-747 RNU6-901P LINC02006
GH03J153463 Enhancer 0.5 Ensembl 0.3 +32.4 32445 1 MEF2C BCL11A ARNT MEF2B SPI1 ATF7 ZNF24 MEF2A RF00026-747 RNU6-901P LINC02877 LINC02006
GH03J153441 Enhancer 0.3 Ensembl 0.4 +10.9 10945 0.8 ZNF596 LINC02877 RF00026-747 RNU6-901P LINC02006
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02877 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02877

Genomic Locations for LINC02877 Gene

Genomic Locations for LINC02877 Gene
chr3:153,431,856-153,502,697
(GRCh38/hg38)
Size:
70,842 bases
Orientation:
Plus strand
chr3:153,202,284-153,220,486
(GRCh37/hg19)
Size:
18,203 bases
Orientation:
Plus strand

Genomic View for LINC02877 Gene

Genes around LINC02877 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02877 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02877 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02877 Gene

Proteins for LINC02877 Gene

Post-translational modifications for LINC02877 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02877 Gene

Domains & Families for LINC02877 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02877 Gene

Function for LINC02877 Gene

Phenotypes From GWAS Catalog for LINC02877 Gene

Phenotypes for LINC02877 Gene

genes like me logo Genes that share phenotypes with LINC02877: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02877 Gene

Localization for LINC02877 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02877 gene
Compartment Confidence
extracellular 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02877 Gene

Pathways & Interactions for LINC02877 Gene

PathCards logo

SuperPathways for LINC02877 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02877 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02877 Gene

Drugs & Compounds for LINC02877 Gene

No Compound Related Data Available

Transcripts for LINC02877 Gene

mRNA/cDNA for LINC02877 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02877 Gene

No ASD Table

Relevant External Links for LINC02877 Gene

GeneLoc Exon Structure for
LINC02877

Expression for LINC02877 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02877

SOURCE GeneReport for Unigene cluster for LINC02877 Gene:

Hs.58586
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02877 Gene

Orthologs for LINC02877 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02877 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3H3orf79 30
  • 99.58 (n)
C3orf79 31
  • 99 (a)
OneToOne
Species where no ortholog for LINC02877 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC02877 Gene

ENSEMBL:
Gene Tree for LINC02877 (if available)
TreeFam:
Gene Tree for LINC02877 (if available)

Paralogs for LINC02877 Gene

No data available for Paralogs for LINC02877 Gene

Variants for LINC02877 Gene

Additional dbSNP identifiers (rs#s) for LINC02877 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02877 Gene

Variant ID Type Subtype PubMed ID
esv2677975 CNV deletion 23128226
esv3569066 CNV loss 25503493
esv3598228 CNV loss 21293372
esv3598229 CNV loss 21293372
nsv460913 CNV gain 19166990
nsv526058 CNV loss 19592680
nsv592075 CNV gain 21841781

Variation tolerance for LINC02877 Gene

Residual Variation Intolerance Score: 71.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.07; 50.68% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02877 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02877

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02877 Gene

Disorders for LINC02877 Gene

Additional Disease Information for LINC02877

No disorders were found for LINC02877 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02877 Gene

Publications for LINC02877 Gene

No publications were found for LINC02877 Gene.

No data available for Mastermind for LINC02877 Gene

Products for LINC02877 Gene

Sources for LINC02877 Gene