Aliases for LINC02875 Gene

RNA type for LINC02875 Gene

lncRNA

Aliases for LINC02875 Gene

External Ids for LINC02875 Gene

Previous HGNC Symbols for LINC02875 Gene

  • C17orf82

Summaries for LINC02875 Gene

GeneCards Summary for LINC02875 Gene

LINC02875 (Long Intergenic Non-Protein Coding RNA 2875) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02875 Gene

Genomics for LINC02875 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02875 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02875 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02875

Genomic Locations for LINC02875 Gene

Latest Assembly
chr17:61,411,750-61,413,280
(GRCh38/hg38)
Size:
1,531 bases
Orientation:
Plus strand

Previous Assembly
chr17:59,489,112-59,490,641
(GRCh37/hg19 by Entrez Gene)
Size:
1,530 bases
Orientation:
Plus strand

chr17:59,489,112-59,490,641
(GRCh37/hg19 by Ensembl)
Size:
1,530 bases
Orientation:
Plus strand

Genomic View for LINC02875 Gene

Genes around LINC02875 on UCSC Golden Path with GeneCards custom track
LINC02875 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02875 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02875 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02875 Gene

Proteins for LINC02875 Gene

  • Protein details for LINC02875 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86X59-CQ082_HUMAN
    Recommended name:
    Putative uncharacterized protein LINC02875
    Protein Accession:
    Q86X59

    Protein attributes for LINC02875 Gene

    Size:
    251 amino acids
    Molecular mass:
    25393 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC02875 Gene

Post-translational modifications for LINC02875 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC02875 Gene

Domains & Families for LINC02875 Gene

Gene Families for LINC02875 Gene

genes like me logo Genes that share domains with LINC02875: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02875 Gene

Function for LINC02875 Gene

Phenotypes From GWAS Catalog for LINC02875 Gene

Gene Ontology (GO) - Molecular Function for LINC02875 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LINC02875: view
genes like me logo Genes that share phenotypes with LINC02875: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC02875 Gene

Localization for LINC02875 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02875 gene
Compartment Confidence
nucleus 2
cytosol 1
extracellular 0
peroxisome 0

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02875 Gene

Pathways & Interactions for LINC02875 Gene

PathCards logo

SuperPathways for LINC02875 Gene

No Data Available

Interacting Proteins for LINC02875 Gene

Gene Ontology (GO) - Biological Process for LINC02875 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02875 Gene

Drugs & Compounds for LINC02875 Gene

No Compound Related Data Available

Transcripts for LINC02875 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02875 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007D433D_9606 lncRNA 1530 3

RefSeq: NR_160788,

Ensembl: ENST00000623772 (view in UCSC) ,

LNCipedia: lnc-TBX2-8:1,

LINC02875 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02875 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02875

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02875 Gene

No ASD Table

Relevant External Links for LINC02875 Gene

GeneLoc Exon Structure for
LINC02875

Expression for LINC02875 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02875

SOURCE GeneReport for Unigene cluster for LINC02875 Gene:

Hs.434459
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02875 Gene

Orthologs for LINC02875 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02875 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C17H17orf82 29
  • 98.78 (n)
Species where no ortholog for LINC02875 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02875 Gene

ENSEMBL:
Gene Tree for LINC02875 (if available)
TreeFam:
Gene Tree for LINC02875 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02875

Paralogs for LINC02875 Gene

No data available for Paralogs for LINC02875 Gene

Variants for LINC02875 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02875 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
rs9907379 -- p.Leu186Pro

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02875 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02875 Gene

Variant ID Type Subtype PubMed ID
dgv43n68 CNV loss 17160897
nsv518130 CNV gain 19592680
nsv952350 CNV deletion 24416366

Variation tolerance for LINC02875 Gene

Residual Variation Intolerance Score: 95.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.19; 75.93% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02875 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02875
Leiden Open Variation Database (LOVD)
LINC02875

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC02875 Gene

Disorders for LINC02875 Gene

Additional Disease Information for LINC02875

No disorders were found for LINC02875 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02875 Gene

Publications for LINC02875 Gene

  1. Comparative Protein Interaction Network Analysis Identifies Shared and Distinct Functions for the Human ROCO Proteins. (PMID: 29513927) Tomkins JE … Manzoni C (Proteomics 2018) 3
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3
  3. Phospho-tyrosine dependent protein-protein interaction network. (PMID: 25814554) Grossmann A … Stelzl U (Molecular systems biology 2015) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3
  5. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M … Stelzl U (Nature methods 2013) 3

No data available for Mastermind for LINC02875 Gene

Products for LINC02875 Gene

Sources for LINC02875 Gene