Aliases for LINC02874 Gene

Subcategory (RNA class) for LINC02874 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02874 Gene

  • Long Intergenic Non-Protein Coding RNA 2874 2 3 5
  • LINC02874 2 5
  • Chromosome 12 Open Reading Frame 80 2
  • NONHSAG011186.2 91
  • HSALNG0091161 164
  • Lnc-KRT80-1 165
  • C12orf80 3

External Ids for LINC02874 Gene

Previous HGNC Symbols for LINC02874 Gene

  • C12orf80

Summaries for LINC02874 Gene

GeneCards Summary for LINC02874 Gene

LINC02874 (Long Intergenic Non-Protein Coding RNA 2874) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02874 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02874 Gene

Genomics for LINC02874 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02874 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J052180 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.8 +25.2 25156 15.1 HNRNPL CREB1 ATF7 PRDM10 ZNF629 KDM1A ZNF692 FOXA1 PRDM1 RFX1 KRT80 ZNF740 HNRNPA3P10 CSAD ENSG00000257808 KRT7 POU6F1 SPRYD3 LINC02874 NR4A1
GH12J052196 Promoter/Enhancer 1.9 EPDnew FANTOM5 ENCODE CraniofacialAtlas dbSUPER 7.3 +5.7 5688 22.5 CEBPG HNRNPL CREB1 CTCF ZBTB33 PRDM10 REST ZNF629 ZNF692 TARDBP LINC00592 ZNF740 KRT7 HNRNPA3P10 KRT86 KRT87P KRT81 POU6F1 KRT83 ENSG00000257337
GH12J052221 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -9.3 -9290 3.8 CTCF FOXA1 REST TRIM22 SP1 RFX1 SMARCC1 JUND SMARCC2 CEBPB KRT7 KRT80 KRT86 KRT87P KRT83 KRT81 KRT77 LINC02874 lnc-KRT7-2 LINC00592
GH12J052229 Enhancer 0.6 ENCODE dbSUPER 0.4 -14.9 -14931 0.2 FOXA1 CUX1 GATA3 FOS KRT77 KRT7 lnc-KRT7-2 LINC02874 KRT80 LINC00592
GH12J052225 Enhancer 0.2 dbSUPER 0.4 -12.2 -12206 0.8 KRT80 KRT86 KRT87P KRT83 KRT81 KRT7 KRT77 lnc-KRT7-2 LINC02874 LINC00592
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02874 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02874

Genomic Locations for LINC02874 Gene

Genomic Locations for LINC02874 Gene
chr12:52,202,266-52,213,621
(GRCh38/hg38)
Size:
11,356 bases
Orientation:
Minus strand
chr12:52,599,365-52,604,639
(GRCh37/hg19)
Size:
5,275 bases
Orientation:
Minus strand

Genomic View for LINC02874 Gene

Genes around LINC02874 on UCSC Golden Path with GeneCards custom track
LINC02874 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02874 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02874 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02874 Gene

Proteins for LINC02874 Gene

Post-translational modifications for LINC02874 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02874 Gene

Domains & Families for LINC02874 Gene

Gene Families for LINC02874 Gene

genes like me logo Genes that share domains with LINC02874: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02874 Gene

Function for LINC02874 Gene

Phenotypes From GWAS Catalog for LINC02874 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02874 Gene

Localization for LINC02874 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02874 Gene

Pathways & Interactions for LINC02874 Gene

PathCards logo

SuperPathways for LINC02874 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02874 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02874 Gene

Drugs & Compounds for LINC02874 Gene

No Compound Related Data Available

Transcripts for LINC02874 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02874 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000235E0A_9606 lncRNA 571 4

Ensembl: ENST00000553017 (view in UCSC) ,

LncBook: HSALNT0189155,

LNCipedia: lnc-KRT80-1:1,

NONCODE: NONHSAT028342.2,

URS0000AABF5D_9606 lncRNA 1220 3

Ensembl: ENST00000639627 (view in UCSC) ,

LncBook: HSALNT0189152,

LNCipedia: lnc-KRT80-1:9,

URS0000590638_9606 lncRNA 823 3

Ensembl: ENST00000551332 (view in UCSC) ,

LNCipedia: lnc-KRT80-1:3,

NONCODE: NONHSAT028341.2,

URS0000EEACD4_9606 lncRNA 1616 2

HGNC: 27473,

RefSeq: NR_164131,

URS0000EEACB2_9606 lncRNA 2025 1

RefSeq: NR_164127,

LINC02874 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02874 Gene

1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02874

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02874 Gene

No ASD Table

Relevant External Links for LINC02874 Gene

GeneLoc Exon Structure for
LINC02874

Expression for LINC02874 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02874

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02874 Gene

Orthologs for LINC02874 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02874 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC100608471 30
  • 98.37 (n)
Species where no ortholog for LINC02874 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02874 Gene

ENSEMBL:
Gene Tree for LINC02874 (if available)
TreeFam:
Gene Tree for LINC02874 (if available)

Paralogs for LINC02874 Gene

No data available for Paralogs for LINC02874 Gene

Variants for LINC02874 Gene

Additional dbSNP identifiers (rs#s) for LINC02874 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02874 Gene

Variant ID Type Subtype PubMed ID
esv2759899 CNV gain 17122850
nsv469381 CNV loss 19166990
nsv558899 CNV loss 21841781
nsv832409 CNV loss 17160897

Additional Variant Information for LINC02874 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02874

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02874 Gene

Disorders for LINC02874 Gene

No disorders were found for LINC02874 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02874 Gene

Publications for LINC02874 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for LINC02874 Gene

Products for LINC02874 Gene

Sources for LINC02874 Gene