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Aliases for LINC02873 Gene
Data sources for LINC02873 Gene:
Subcategory (RNA class) for LINC02873 Gene
lncRNA
Aliases for LINC02873 Gene
- Long Intergenic Non-Protein Coding RNA 2873 (HGNC, NCBI Entrez Gene, Ensembl)
- Chromosome 11 Open Reading Frame 44 (HGNC)
- Uncharacterized Protein C11orf44 (NCBI Entrez Gene)
- NONHSAG010053.2 (NONCODE)
- NONHSAG010055.2 (NONCODE)
External Ids for LINC02873 Gene
- HGNC: 26805
- NCBI Entrez Gene: 283171
- Ensembl: ENSG00000175728
Previous HGNC Symbols for LINC02873 Gene
- C11orf44
Summaries for LINC02873 Gene
GeneCards Summary for LINC02873 Gene
LINC02873 (Long Intergenic Non-Protein Coding RNA 2873) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02873 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02873 Gene
Genomics for LINC02873 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02873 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02873 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02873
Genomic Locations for LINC02873 Gene
Latest Assembly
- chr11:130,631,288-130,759,024
- (GRCh38/hg38)
- Size:
- 127,737 bases
- Orientation:
- Plus strand
Previous Assembly
- chr11:130,542,851-130,587,247
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 44,397 bases
- Orientation:
- Plus strand
- chr11:130,542,851-130,587,247
- (GRCh37/hg19 by Ensembl)
- Size:
- 44,397 bases
- Orientation:
- Plus strand
Genomic View for LINC02873 Gene
Genes around LINC02873 on UCSC Golden Path with GeneCards custom track
LINC02873 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q24.3 by HGNC
- 11q24.3 by Entrez Gene
- 11q24.3 by Ensembl
LINC02873 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02873 Gene
Proteins for LINC02873 Gene
Post-translational modifications for LINC02873 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02873 Gene
Domains & Families for LINC02873 Gene
Gene Families for LINC02873 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02873 Gene
Function for LINC02873 Gene
Phenotypes From GWAS Catalog for LINC02873 Gene
Phenotypes for LINC02873 Gene
- GenomeRNAi human phenotypes for LINC02873:
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC02873 - Starting at $85 >
- * LINC02873 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for LINC02873
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC02873
miRNA for LINC02873 Gene
- miRTarBase miRNAs that target LINC02873
-
- hsa-miR-5010-3p (MIRT530158)
- hsa-miR-2113 (MIRT530159)
- hsa-miR-758-3p (MIRT530160)
- hsa-miR-3611 (MIRT530161)
- hsa-miR-548aw (MIRT530162)
- hsa-miR-203b-3p (MIRT530163)
- hsa-miR-1468-3p (MIRT530164)
- hsa-miR-548x-5p (MIRT530165)
- hsa-miR-548g-5p (MIRT530166)
- hsa-miR-548f-5p (MIRT530167)
- hsa-miR-548aj-5p (MIRT530168)
- hsa-miR-4539 (MIRT530169)
- hsa-miR-146a-3p (MIRT530170)
- hsa-miR-548o-3p (MIRT530171)
- hsa-miR-1323 (MIRT530172)
- hsa-miR-4714-5p (MIRT530173)
- hsa-miR-7-2-3p (MIRT530174)
- hsa-miR-7-1-3p (MIRT530175)
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC02873
- Browse OriGene Inhibitory RNA Products For LINC02873
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02873
Clone products for research
- Applied Biological Materials (abm): Clones for LINC02873 - Starting at $45 >
- * LINC02873 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC02873
Cell Lines for research
-
Horizon Cell Lines for LINC02873
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC02873 Gene
Localization for LINC02873 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 3 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02873 Gene
Transcripts for LINC02873 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02873 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00007CAE04_9606 | lncRNA | 3547 | 3 |
RefSeq: NR_164144, Ensembl: ENST00000317019 (view in UCSC) , LNCipedia: lnc-ADAMTS15-5:7, |
| URS00008BCC18_9606 | lncRNA | 365 | 3 |
LncBook: HSALNT0183510, LNCipedia: lnc-ADAMTS15-5:11, NONCODE: NONHSAT025140.2, |
| URS0000D5CF71_9606 | lncRNA | 6816 | 2 |
LncBook: HSALNT0183486, LNCipedia: lnc-ADAMTS15-5:3, |
| URS00008B79AC_9606 | lncRNA | 828 | 2 |
LNCipedia: lnc-ADAMTS15-5:8, NONCODE: NONHSAT025137.2, |
| URS00008B9BF7_9606 | lncRNA | 678 | 2 |
LNCipedia: lnc-ADAMTS15-5:12, NONCODE: NONHSAT025141.2, |
LINC02873 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02873 Gene
- 1 REFSEQ mRNAs :
- 1 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC02873 - Starting at $85 >
- * LINC02873 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for LINC02873
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC02873
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC02873
- Browse OriGene Inhibitory RNA Products For LINC02873
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02873
Clone products for research
- Applied Biological Materials (abm): Clones for LINC02873 - Starting at $45 >
- * LINC02873 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC02873
Relevant External Links for LINC02873 Gene
- GeneLoc Exon Structure for
- LINC02873
Expression for LINC02873 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02873
SOURCE GeneReport for Unigene cluster for LINC02873 Gene:
Hs.376151
No Expression Related Data Available
Primer products for research
-
OriGene qPCR primer pairs for LINC02873
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02873 Gene
Orthologs for LINC02873 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | LOC100611626 30 |
|
||
| C11orf44 31 |
|
OneToOne |
- Species where no ortholog for LINC02873 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- Dog (Canis familiaris)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Oppossum (Monodelphis domestica)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for LINC02873 Gene
No data available for Paralogs for LINC02873 Gene
Variants for LINC02873 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1296n100 | CNV | gain | 25217958 |
| nsv1035733 | CNV | gain | 25217958 |
| nsv1048533 | CNV | gain | 25217958 |
| nsv471826 | CNV | novel sequence insertion | 20440878 |
| nsv526747 | CNV | gain | 19592680 |
| nsv556572 | CNV | gain | 21841781 |
Gene Damage Index Score:
0.17;
3.86% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for LINC02873 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02873
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02873 Gene
Disorders for LINC02873 Gene
Additional Disease Information for LINC02873
No disorders were found for LINC02873 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02873 Gene
Publications for LINC02873 Gene
- Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LINC02873 Gene
Products for LINC02873 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02873
- Origene Custom Protein Services for LINC02873
- Origene shrna and RNAi products in human, mouse, rat for LINC02873
- Browse OriGene Inhibitory RNA Products For LINC02873
- OriGene qPCR primer pairs for LINC02873
- OriGene CRISPR knockouts for LINC02873
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02873
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Horizon Cell Lines for LINC02873
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC02873
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC02873
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02873
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02873
Sources for LINC02873 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB