Aliases for LINC02873 Gene

Data sources for LINC02873 Gene:

Subcategory (RNA class) for LINC02873 Gene

lncRNA

Aliases for LINC02873 Gene

External Ids for LINC02873 Gene

Previous HGNC Symbols for LINC02873 Gene

  • C11orf44

Summaries for LINC02873 Gene

GeneCards Summary for LINC02873 Gene

LINC02873 (Long Intergenic Non-Protein Coding RNA 2873) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02873 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02873 Gene

Genomics for LINC02873 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02873 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02873 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02873

Genomic Locations for LINC02873 Gene

Latest Assembly
chr11:130,631,288-130,759,024
(GRCh38/hg38)
Size:
127,737 bases
Orientation:
Plus strand

Previous Assembly
chr11:130,542,851-130,587,247
(GRCh37/hg19 by Entrez Gene)
Size:
44,397 bases
Orientation:
Plus strand

chr11:130,542,851-130,587,247
(GRCh37/hg19 by Ensembl)
Size:
44,397 bases
Orientation:
Plus strand

Genomic View for LINC02873 Gene

Genes around LINC02873 on UCSC Golden Path with GeneCards custom track
LINC02873 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02873 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02873 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02873 Gene

Proteins for LINC02873 Gene

Post-translational modifications for LINC02873 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02873 Gene

Domains & Families for LINC02873 Gene

Gene Families for LINC02873 Gene

genes like me logo Genes that share domains with LINC02873: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02873 Gene

Function for LINC02873 Gene

Phenotypes From GWAS Catalog for LINC02873 Gene

genes like me logo Genes that share phenotypes with LINC02873: view

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02873

Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC02873 Gene

Localization for LINC02873 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02873 gene
Compartment Confidence
extracellular 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02873 Gene

Pathways & Interactions for LINC02873 Gene

PathCards logo

SuperPathways for LINC02873 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02873 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02873 Gene

Drugs & Compounds for LINC02873 Gene

No Compound Related Data Available

Transcripts for LINC02873 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02873 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007CAE04_9606 lncRNA 3547 3

RefSeq: NR_164144,

Ensembl: ENST00000317019 (view in UCSC) ,

LNCipedia: lnc-ADAMTS15-5:7,

URS00008BCC18_9606 lncRNA 365 3

LncBook: HSALNT0183510,

LNCipedia: lnc-ADAMTS15-5:11,

NONCODE: NONHSAT025140.2,

URS0000D5CF71_9606 lncRNA 6816 2

LncBook: HSALNT0183486,

LNCipedia: lnc-ADAMTS15-5:3,

URS00008B79AC_9606 lncRNA 828 2

LNCipedia: lnc-ADAMTS15-5:8,

NONCODE: NONHSAT025137.2,

URS00008B9BF7_9606 lncRNA 678 2

LNCipedia: lnc-ADAMTS15-5:12,

NONCODE: NONHSAT025141.2,

LINC02873 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02873 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02873

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02873 Gene

No ASD Table

Relevant External Links for LINC02873 Gene

GeneLoc Exon Structure for
LINC02873

Expression for LINC02873 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02873

SOURCE GeneReport for Unigene cluster for LINC02873 Gene:

Hs.376151
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02873 Gene

Orthologs for LINC02873 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02873 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC100611626 30
  • 98.63 (n)
C11orf44 31
  • 98 (a)
OneToOne
Species where no ortholog for LINC02873 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02873 Gene

ENSEMBL:
Gene Tree for LINC02873 (if available)
TreeFam:
Gene Tree for LINC02873 (if available)

Paralogs for LINC02873 Gene

No data available for Paralogs for LINC02873 Gene

Variants for LINC02873 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02873 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02873 Gene

Variant ID Type Subtype PubMed ID
dgv1296n100 CNV gain 25217958
nsv1035733 CNV gain 25217958
nsv1048533 CNV gain 25217958
nsv471826 CNV novel sequence insertion 20440878
nsv526747 CNV gain 19592680
nsv556572 CNV gain 21841781

Variation tolerance for LINC02873 Gene

Gene Damage Index Score: 0.17; 3.86% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02873 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02873

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02873 Gene

Disorders for LINC02873 Gene

Additional Disease Information for LINC02873

No disorders were found for LINC02873 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02873 Gene

Publications for LINC02873 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC02873 Gene

Products for LINC02873 Gene

Sources for LINC02873 Gene