LINC02873 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2873

GC11P130631
GIFtS:
17

Aliases for LINC02873 Gene

Subcategory (RNA class) for LINC02873 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02873 Gene

  • Long Intergenic Non-Protein Coding RNA 2873 2 3
  • Chromosome 11 Open Reading Frame 44 2 5
  • C11orf44 3 5
  • Uncharacterized Protein C11orf44 3
  • Lnc-ADAMTS15-5 168
  • NONHSAG010055 92
  • HSALNG0088232 167
  • NONHSAG010053 92
  • NONHSAG010056 92
  • LINC02873 2

External Ids for LINC02873 Gene

Previous HGNC Symbols for LINC02873 Gene

  • C11orf44

Summaries for LINC02873 Gene

GeneCards Summary for LINC02873 Gene

LINC02873 (Long Intergenic Non-Protein Coding RNA 2873) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02873 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02873 Gene

Genomics for LINC02873 Gene

GeneHancer (GH) Regulatory Elements for LINC02873 Gene

Promoters and enhancers for LINC02873 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J130630 Enhancer 0.7 Ensembl ENCODE 500.7 +0.2 172 2.2 JUND FOS FOSL2 FOSL1 ZNF189 CTCF HIC1 PRDM6 FEZF1 MZF1 LINC02873 MIR8052 lnc-SNX19-7
GH11J130521 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas 10.3 -108.2 -108154 3.1 USF1 JUND FOS REST TOE1 CTBP1 MXI1 POLR2A NR2F2 WT1 lnc-ADAMTS15-2 LINC02873 ENSG00000255155 lnc-ADAMTS8-2
GH11J130766 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 10.9 +134.7 134672 1.2 SP1 EP300 RELA MEF2C RCOR1 TRIM22 BCL11A TCF12 SRF ARNT LINC02873 lnc-ADAMTS15-8 piR-41245-056 LOC105369576
GH11J130600 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 11 -30.2 -30228 4.6 ZIC2 ATF2 ZNF341 CREB1 NR3C1 RFX5 NRF1 GLIS1 ESR1 SPI1 HSALNG0088228 LINC02873 APLP2 lnc-ADAMTS15-9 lnc-SNX19-7
GH11J130760 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 11.1 +130.2 130172 3 TEAD4 JUND GATA3 NANOG MAFK FOXA1 MYC LINC02873 lnc-ADAMTS15-8 piR-41245-056 LOC105369576
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02873 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02873

Genomic Locations for LINC02873 Gene

Genomic Locations for LINC02873 Gene
chr11:130,631,329-130,759,024
(GRCh38/hg38)
Size:
127,696 bases
Orientation:
Plus strand
chr11:130,542,851-130,587,247
(GRCh37/hg19)
Size:
44,397 bases
Orientation:
Plus strand

Genomic View for LINC02873 Gene

Genes around LINC02873 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02873 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02873 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02873 Gene

Proteins for LINC02873 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02873 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02873 Gene

Domains & Families for LINC02873 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02873 Gene

Function for LINC02873 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02873 Gene

genes like me logo Genes that share phenotypes with LINC02873: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02873

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02873 Gene

Localization for LINC02873 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02873 gene
Compartment Confidence
extracellular 4

Gene Ontology (GO) - Cellular Components for LINC02873 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with LINC02873: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for LINC02873 Gene

Pathways & Interactions for LINC02873 Gene

PathCards logo

SuperPathways for LINC02873 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02873 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02873 Gene

Drugs & Compounds for LINC02873 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02873 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02873 Gene

12 RNACentral transcripts :
2 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
5 LncBook transcripts :
12 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02873

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02873 Gene

No ASD Table

Relevant External Links for LINC02873 Gene

GeneLoc Exon Structure for
LINC02873

Expression for LINC02873 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02873

SOURCE GeneReport for Unigene cluster for LINC02873 Gene:

Hs.376151
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02873 Gene

Orthologs for LINC02873 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02873 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia LOC100611626 30
  • 98.63 (n)
C11orf44 31
  • 98 (a)
 OneToOne
Species where no ortholog for LINC02873 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC02873 Gene

ENSEMBL:
Gene Tree for LINC02873 (if available)
TreeFam:
Gene Tree for LINC02873 (if available)

Paralogs for LINC02873 Gene

No data available for Paralogs for LINC02873 Gene

Variants for LINC02873 Gene

Additional dbSNP identifiers (rs#s) for LINC02873 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02873 Gene

Variant ID Type Subtype PubMed ID
dgv1296n100 CNV gain 25217958
nsv1035733 CNV gain 25217958
nsv1048533 CNV gain 25217958
nsv471826 CNV novel sequence insertion 20440878
nsv526747 CNV gain 19592680
nsv556572 CNV gain 21841781

Variation tolerance for LINC02873 Gene

Gene Damage Index Score: 0.17; 3.86% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02873 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02873

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02873 Gene

Disorders for LINC02873 Gene

Additional Disease Information for LINC02873

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02873 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02873 Gene

Publications for LINC02873 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LINC02873 Gene

Products for LINC02873 Gene

Sources for LINC02873 Gene