Aliases for LINC02869 Gene

Subcategory (RNA class) for LINC02869 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02869 Gene

  • Long Intergenic Non-Protein Coding RNA 2869 2 3 5
  • LINC02869 2 5
  • Chromosome 1 Open Reading Frame 143 (Putative) 2
  • Chromosome 1 Open Reading Frame 143 2
  • NONHSAG004305.2 91
  • HSALNG0010607 164
  • Lnc-TGFB2-1 165
  • C1orf143 3

External Ids for LINC02869 Gene

Previous HGNC Symbols for LINC02869 Gene

  • C1orf143

Summaries for LINC02869 Gene

GeneCards Summary for LINC02869 Gene

LINC02869 (Long Intergenic Non-Protein Coding RNA 2869) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02869 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02869 Gene

Genomics for LINC02869 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02869 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02869 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02869 Gene

Genomic Locations for LINC02869 Gene
chr1:218,459,265-218,525,978
(GRCh38/hg38)
Size:
66,714 bases
Orientation:
Plus strand
chr1:218,683,438-218,699,320
(GRCh37/hg19)
Size:
15,883 bases
Orientation:
Plus strand

Genomic View for LINC02869 Gene

Genes around LINC02869 on UCSC Golden Path with GeneCards custom track
LINC02869 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02869 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02869 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02869 Gene

Proteins for LINC02869 Gene

Post-translational modifications for LINC02869 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02869 Gene

Domains & Families for LINC02869 Gene

Gene Families for LINC02869 Gene

genes like me logo Genes that share domains with LINC02869: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02869 Gene

Function for LINC02869 Gene

Phenotypes From GWAS Catalog for LINC02869 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02869 Gene

Localization for LINC02869 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02869 Gene

Pathways & Interactions for LINC02869 Gene

PathCards logo

SuperPathways for LINC02869 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02869 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02869 Gene

Drugs & Compounds for LINC02869 Gene

No Compound Related Data Available

Transcripts for LINC02869 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02869 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000776C02_9606 lncRNA 813 4

Ensembl: ENST00000491260 (view in UCSC) ,

LncBook: HSALNT0021983,

LNCipedia: lnc-TGFB2-1:2,

NONCODE: NONHSAT009520.2,

URS000076282C_9606 lncRNA 762 3

Ensembl: ENST00000443836 (view in UCSC) ,

LncBook: HSALNT0021981,

LNCipedia: lnc-TGFB2-1:1,

URS0000BC455E_9606 lncRNA 763 2

HGNC: 32045,

RefSeq: NR_146760,

URS0000EEBA79_9606 lncRNA 814 1

Ensembl: ENST00000668967 (view in UCSC) ,

URS0000EEE488_9606 lncRNA 751 1

Ensembl: ENST00000663551 (view in UCSC) ,

LINC02869 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02869 Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02869 Gene

No ASD Table

Relevant External Links for LINC02869 Gene

GeneLoc Exon Structure for
LINC02869

Expression for LINC02869 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02869 Gene

Orthologs for LINC02869 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02869 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C1orf143 31
  • 96 (a)
OneToOne
Species where no ortholog for LINC02869 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02869 Gene

ENSEMBL:
Gene Tree for LINC02869 (if available)
TreeFam:
Gene Tree for LINC02869 (if available)

Paralogs for LINC02869 Gene

No data available for Paralogs for LINC02869 Gene

Variants for LINC02869 Gene

Additional dbSNP identifiers (rs#s) for LINC02869 Gene

Variation tolerance for LINC02869 Gene

Gene Damage Index Score: 3.49; 55.24% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02869 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02869

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Structural Variations from Database of Genomic Variants (DGV) for LINC02869 Gene

Disorders for LINC02869 Gene

No disorders were found for LINC02869 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02869 Gene

Publications for LINC02869 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

No data available for Mastermind for LINC02869 Gene

Products for LINC02869 Gene

Sources for LINC02869 Gene