Aliases for LINC02868 Gene

Data sources for LINC02868 Gene:

Subcategory (RNA class) for LINC02868 Gene

lncRNA

Aliases for LINC02868 Gene

External Ids for LINC02868 Gene

Previous HGNC Symbols for LINC02868 Gene

  • C1orf137

Summaries for LINC02868 Gene

GeneCards Summary for LINC02868 Gene

LINC02868 (Long Intergenic Non-Protein Coding RNA 2868) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02868 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02868 Gene

Genomics for LINC02868 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02868 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J116693 Enhancer 1 Ensembl ENCODE dbSUPER 250.7 -0.2 -197 2.6 IKZF1 ZNF623 EP300 ZFP91 TBP PTBP1 HDAC2 NFE2 NFE2L2 ZMYM3 LINC02868 IGSF3 MIR320B1 CD2 HSALNG0006345 HSALNG0006346
GH01J116695 Enhancer 0.3 Ensembl 250.7 +1.6 1590 0.2 CEBPB LINC02868 MIR320B1 IGSF3 CD2 HSALNG0006346 LOC105378926
GH01J116645 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 10.9 -46.5 -46541 4 FEZF1 CEBPA ZNF217 ZIC2 FOXA2 RXRA SIN3A JUND FOXA1 ZBTB48 HSALNG0006344 IGSF3 MIR320B1 LINC02868 CD101 CD58
GH01J116777 Enhancer 1.1 Ensembl ENCODE dbSUPER 10 +84.0 83990 1.4 CEBPA CUX1 FOXA2 EBF1 RARA JUND FOSL1 PRDM6 FOXP1 MAX CD2 CD101 LINC02868 FTH1P22 lnc-IGSF3-4 piR-41306-014 PTGFRN
GH01J116721 Enhancer 0.8 Ensembl ENCODE 11.2 +28.4 28432 1.3 ARNT ZEB2 ZNF316 ZBTB40 NFE2 CTCF MAFG MAFF ATF4 MEIS2 LINC02868 LOC101929099 TTF2 CD2 MIR320B1 IGSF3 CD101 GAPDHP64 piR-31508-004
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02868 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02868

Genomic Locations for LINC02868 Gene

Latest Assembly
chr1:116,694,111-116,706,603
(GRCh38/hg38)
Size:
12,493 bases
Orientation:
Plus strand

Previous Assembly
chr1:117,236,734-117,249,225
(GRCh37/hg19 by Entrez Gene)
Size:
12,492 bases
Orientation:
Plus strand

chr1:117,236,734-117,249,225
(GRCh37/hg19 by Ensembl)
Size:
12,492 bases
Orientation:
Plus strand

Genomic View for LINC02868 Gene

Genes around LINC02868 on UCSC Golden Path with GeneCards custom track
LINC02868 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02868 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02868 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02868 Gene

Proteins for LINC02868 Gene

Post-translational modifications for LINC02868 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02868 Gene

Domains & Families for LINC02868 Gene

Gene Families for LINC02868 Gene

genes like me logo Genes that share domains with LINC02868: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02868 Gene

Function for LINC02868 Gene

Phenotypes From GWAS Catalog for LINC02868 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02868 Gene

Localization for LINC02868 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02868 gene
Compartment Confidence
extracellular 2
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02868 Gene

Pathways & Interactions for LINC02868 Gene

PathCards logo

SuperPathways for LINC02868 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02868 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02868 Gene

Drugs & Compounds for LINC02868 Gene

No Compound Related Data Available

Transcripts for LINC02868 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02868 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007C6FEA_9606 lncRNA 386 3

RefSeq: NR_149353,

Ensembl: ENST00000624685 (view in UCSC) ,

LNCipedia: lnc-CD2-2:1,

LINC02868 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02868 Gene

1 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02868

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02868 Gene

No ASD Table

Relevant External Links for LINC02868 Gene

GeneLoc Exon Structure for
LINC02868

Expression for LINC02868 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02868

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02868 Gene

Orthologs for LINC02868 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02868 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C1orf137 31
  • 100 (a)
OneToOne
LOC101059503 30
  • 99.66 (n)
Species where no ortholog for LINC02868 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02868 Gene

ENSEMBL:
Gene Tree for LINC02868 (if available)
TreeFam:
Gene Tree for LINC02868 (if available)

Paralogs for LINC02868 Gene

No data available for Paralogs for LINC02868 Gene

Variants for LINC02868 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02868 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02868 Gene

Variant ID Type Subtype PubMed ID
esv2758963 CNV gain+loss 17122850
nsv428190 CNV gain 18775914
nsv473513 CNV novel sequence insertion 20440878
nsv831148 CNV gain 17160897

Variation tolerance for LINC02868 Gene

Gene Damage Index Score: 0.06; 1.30% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02868 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02868

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02868 Gene

Disorders for LINC02868 Gene

Additional Disease Information for LINC02868

No disorders were found for LINC02868 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02868 Gene

Publications for LINC02868 Gene

No publications were found for LINC02868 Gene.

No data available for Mastermind for LINC02868 Gene

Products for LINC02868 Gene

Sources for LINC02868 Gene