Aliases for LINC02860 Gene

Subcategory (RNA class) for LINC02860 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LINC02860 Gene

  • Long Intergenic Non-Protein Coding RNA 2860 2 3 5
  • LINC02860 2 5
  • Chromosome 7 Open Reading Frame 71 2
  • Lnc-SNX10-7 165
  • C7orf71 3

External Ids for LINC02860 Gene

Previous HGNC Symbols for LINC02860 Gene

  • C7orf71

Summaries for LINC02860 Gene

GeneCards Summary for LINC02860 Gene

LINC02860 (Long Intergenic Non-Protein Coding RNA 2860) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02860 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02860 Gene

Genomics for LINC02860 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02860 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02860 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LINC02860

Genomic Locations for LINC02860 Gene

Genomic Locations for LINC02860 Gene
chr7:26,637,871-26,647,305
(GRCh38/hg38)
Size:
9,435 bases
Orientation:
Plus strand
chr7:26,677,490-26,686,924
(GRCh37/hg19)
Size:
9,435 bases
Orientation:
Plus strand

Genomic View for LINC02860 Gene

Genes around LINC02860 on UCSC Golden Path with GeneCards custom track
LINC02860 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02860 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02860 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02860 Gene

Proteins for LINC02860 Gene

Post-translational modifications for LINC02860 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02860 Gene

Domains & Families for LINC02860 Gene

Gene Families for LINC02860 Gene

genes like me logo Genes that share domains with LINC02860: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02860 Gene

Function for LINC02860 Gene

Phenotypes From GWAS Catalog for LINC02860 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02860

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02860 Gene

Localization for LINC02860 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02860 gene
Compartment Confidence
nucleus 2
cytosol 1
mitochondrion 0

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02860 Gene

Pathways & Interactions for LINC02860 Gene

PathCards logo

SuperPathways for LINC02860 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02860 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02860 Gene

Drugs & Compounds for LINC02860 Gene

No Compound Related Data Available

Transcripts for LINC02860 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02860 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000AA278F_9606 lncRNA 1963 2

Ensembl: ENST00000614528 (view in UCSC) ,

LNCipedia: lnc-SNX10-7:3,

URS0000E60B38_9606 lncRNA 1958 2

HGNC: 22364,

RefSeq: NR_161201,

URS00007BC28A_9606 lncRNA 1956 2

Ensembl: ENST00000409974 (view in UCSC) ,

LNCipedia: lnc-SNX10-7:2,

URS0000E60AC8_9606 lncRNA 1954 1

RefSeq: NR_161202,

LINC02860 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02860 Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02860

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02860 Gene

No ASD Table

Relevant External Links for LINC02860 Gene

GeneLoc Exon Structure for
LINC02860

Expression for LINC02860 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02860

SOURCE GeneReport for Unigene cluster for LINC02860 Gene:

Hs.413394
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02860 Gene

Orthologs for LINC02860 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02860 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C7H7orf71 30
  • 99.41 (n)
C7orf71 31
  • 99 (a)
OneToOne
Species where no ortholog for LINC02860 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02860 Gene

ENSEMBL:
Gene Tree for LINC02860 (if available)
TreeFam:
Gene Tree for LINC02860 (if available)

Paralogs for LINC02860 Gene

No data available for Paralogs for LINC02860 Gene

Variants for LINC02860 Gene

Additional dbSNP identifiers (rs#s) for LINC02860 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02860 Gene

Variant ID Type Subtype PubMed ID
esv2734161 CNV deletion 23290073
esv3303956 CNV mobile element insertion 20981092
esv3310045 CNV mobile element insertion 20981092
esv3323424 CNV insertion 20981092
esv3397248 CNV insertion 20981092
nsv1020378 CNV gain 25217958
nsv1076611 CNV duplication 25765185
nsv1137204 CNV deletion 24896259
nsv1140755 CNV deletion 24896259
nsv7393 OTHER inversion 18451855
nsv830929 CNV gain 17160897

Variation tolerance for LINC02860 Gene

Gene Damage Index Score: 4.73; 66.36% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02860 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02860

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC02860 Gene

Disorders for LINC02860 Gene

No disorders were found for LINC02860 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02860 Gene

Publications for LINC02860 Gene

  1. Heritability and genetic association analysis of cognition in the Diabetes Heart Study. (PMID: 24684796) Cox AJ … Bowden DW (Neurobiology of aging 2014) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3
  4. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G … Peterson K (Molecular vision 2002) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02860 Gene

Products for LINC02860 Gene

Sources for LINC02860 Gene