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Aliases for LINC02858 Gene

Subcategory (RNA class) for LINC02858 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02858 Gene

  • Long Intergenic Non-Protein Coding RNA 2858 2 3
  • Novel Transcript 5
  • AC130456.8 5

External Ids for LINC02858 Gene

Summaries for LINC02858 Gene

GeneCards Summary for LINC02858 Gene

LINC02858 (Long Intergenic Non-Protein Coding RNA 2858) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02858 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02858 Gene

Genomics for LINC02858 Gene

GeneHancer (GH) Regulatory Elements for LINC02858 Gene

Promoters and enhancers for LINC02858 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J019330 Enhancer 0.9 Ensembl ENCODE 0.7 -3.0 -2958 1.7 MAFK PKNOX1 JUN SP1 NFE2 ZBED1 MAFG FOSL1 STAT1 FOSL2 LINC02858 ENSG00000259871
GH16J019316 Enhancer 0.7 Ensembl ENCODE 0.4 -17.3 -17310 1.8 SP1 ATF7 USF1 ZFHX2 ZNF335 USF2 EGR2 ENSG00000259871 SYT17 LINC02858 CLEC19A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02858 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02858 Gene

Genomic Locations for LINC02858 Gene
chr16:19,334,011-19,337,804
(GRCh38/hg38)
Size:
3,794 bases
Orientation:
Plus strand

Genomic View for LINC02858 Gene

Genes around LINC02858 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02858 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02858 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02858 Gene

Proteins for LINC02858 Gene

Post-translational modifications for LINC02858 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02858 Gene

Domains & Families for LINC02858 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02858 Gene

Function for LINC02858 Gene

Phenotypes From GWAS Catalog for LINC02858 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02858 Gene

Localization for LINC02858 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02858 Gene

Pathways & Interactions for LINC02858 Gene

PathCards logo

SuperPathways for LINC02858 Gene

No Data Available

Interacting Proteins for LINC02858 Gene

Gene Ontology (GO) - Biological Process for LINC02858 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02858 Gene

Drugs & Compounds for LINC02858 Gene

No Compound Related Data Available

Transcripts for LINC02858 Gene

mRNA/cDNA for LINC02858 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02858 Gene

No ASD Table

Relevant External Links for LINC02858 Gene

GeneLoc Exon Structure for
LINC02858
ECgene alternative splicing isoforms for
LINC02858

Expression for LINC02858 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02858 Gene

Orthologs for LINC02858 Gene

Evolution for LINC02858 Gene

ENSEMBL:
Gene Tree for LINC02858 (if available)
TreeFam:
Gene Tree for LINC02858 (if available)

No data available for Orthologs for LINC02858 Gene

Paralogs for LINC02858 Gene

No data available for Paralogs for LINC02858 Gene

Variants for LINC02858 Gene

Sequence variations from dbSNP and Humsavar for LINC02858 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000363702 -- 19,337,437(+) C/A non_coding_transcript_variant
rs1001065014 -- 19,336,523(+) G/A intron_variant
rs1001138368 -- 19,336,805(+) A/G intron_variant
rs1001633296 -- 19,332,738(+) G/A/C upstream_transcript_variant
rs1002403286 -- 19,335,983(+) C/A intron_variant

Additional Variant Information for LINC02858 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02858

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02858 Gene

Disorders for LINC02858 Gene

No disorders were found for LINC02858 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02858 Gene

Publications for LINC02858 Gene

No publications were found for LINC02858 Gene.

No data available for External Links for LINC02858 Gene

Products for LINC02858 Gene

Sources for LINC02858 Gene

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