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Aliases for LINC02840 Gene

Subcategory (RNA class) for LINC02840 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02840 Gene

  • Long Intergenic Non-Protein Coding RNA 2840 2 3
  • Novel Transcript 5
  • AL160162.1 5

External Ids for LINC02840 Gene

Summaries for LINC02840 Gene

GeneCards Summary for LINC02840 Gene

LINC02840 (Long Intergenic Non-Protein Coding RNA 2840) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02840 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02840 Gene

Genomics for LINC02840 Gene

GeneHancer (GH) Regulatory Elements for LINC02840 Gene

Promoters and enhancers for LINC02840 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J152864 Enhancer 0.9 Ensembl ENCODE 0.4 +11.8 11813 0.4 CTCF CEBPG RAD21 REST ZBTB44 SOX6 CTBP1 FOXA2 TEAD1 FOXA1 LINC02840 GC06P152765
GH06J152859 Enhancer 0.5 Ensembl 0.4 +16.4 16413 0.8 CREB1 RUNX3 IRF2 BATF VIP MTRF1L LINC02840 GC06P152765
GH06J152893 Enhancer 0.3 Ensembl 0.4 -17.9 -17887 1 HLF MTRF1L SYNE1 VIP TUBB4BP7 LINC02840
GH06J152821 Enhancer 0.3 Ensembl 0.2 +54.1 54113 0.6 CTCF LINC02840 GC06P152765
GH06J152806 Enhancer 0.3 Ensembl 0.2 +69.6 69613 0.4 POU5F1 GC06P152765 LINC02840
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02840 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02840 Gene

Genomic Locations for LINC02840 Gene
chr6:152,806,226-152,875,814
(GRCh38/hg38)
Size:
69,589 bases
Orientation:
Minus strand
chr6:153,115,631-153,153,048
(GRCh37/hg19)
Size:
37,418 bases
Orientation:
Minus strand

Genomic View for LINC02840 Gene

Genes around LINC02840 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02840 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02840 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02840 Gene

Proteins for LINC02840 Gene

Post-translational modifications for LINC02840 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02840 Gene

Domains & Families for LINC02840 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02840 Gene

Function for LINC02840 Gene

Phenotypes From GWAS Catalog for LINC02840 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02840 Gene

Localization for LINC02840 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02840 Gene

Pathways & Interactions for LINC02840 Gene

PathCards logo

SuperPathways for LINC02840 Gene

No Data Available

Interacting Proteins for LINC02840 Gene

Gene Ontology (GO) - Biological Process for LINC02840 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02840 Gene

Drugs & Compounds for LINC02840 Gene

No Compound Related Data Available

Transcripts for LINC02840 Gene

mRNA/cDNA for LINC02840 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02840 Gene

No ASD Table

Relevant External Links for LINC02840 Gene

GeneLoc Exon Structure for
LINC02840
ECgene alternative splicing isoforms for
LINC02840

Expression for LINC02840 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02840 Gene

Orthologs for LINC02840 Gene

Evolution for LINC02840 Gene

ENSEMBL:
Gene Tree for LINC02840 (if available)
TreeFam:
Gene Tree for LINC02840 (if available)

No data available for Orthologs for LINC02840 Gene

Paralogs for LINC02840 Gene

No data available for Paralogs for LINC02840 Gene

Variants for LINC02840 Gene

Sequence variations from dbSNP and Humsavar for LINC02840 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000048340 -- 152,831,625(-) T/C intron_variant
rs1000090833 -- 152,837,472(-) A/G intron_variant
rs1000113259 -- 152,873,062(-) T/ intron_variant
rs1000137957 -- 152,831,819(-) C/T intron_variant
rs1000160242 -- 152,840,802(-) G/A/T intron_variant

Additional Variant Information for LINC02840 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02840

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02840 Gene

Disorders for LINC02840 Gene

No disorders were found for LINC02840 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02840 Gene

Publications for LINC02840 Gene

No publications were found for LINC02840 Gene.

No data available for External Links for LINC02840 Gene

Products for LINC02840 Gene

Sources for LINC02840 Gene

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