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Aliases for LINC02833 Gene

Subcategory (RNA class) for LINC02833 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02833 Gene

  • Long Intergenic Non-Protein Coding RNA 2833 2 3
  • Novel Transcript 5
  • AL117192.1 5

External Ids for LINC02833 Gene

Summaries for LINC02833 Gene

GeneCards Summary for LINC02833 Gene

LINC02833 (Long Intergenic Non-Protein Coding RNA 2833) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02833 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02833 Gene

Genomics for LINC02833 Gene

GeneHancer (GH) Regulatory Elements for LINC02833 Gene

Promoters and enhancers for LINC02833 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J092887 Enhancer 0.5 Ensembl 607.6 -0.2 -208 5 RFX1 POLR2A RCOR1 FEZF1 LINC02833 CHGA GC14P092878 GC14P092879 GC14P092880 PIR36925 GC14P092353
GH14J092983 Enhancer 1.4 Ensembl ENCODE dbSUPER 5.9 +95.7 95685 4.7 ZNF652 ELF3 CEBPG RERE AHR ZNF24 TFE3 SP1 HNF1A PPARG LINC02833 ITPK1 PIR52280 ITPK1-AS1
GH14J092877 Enhancer 1.1 Ensembl ENCODE 6.9 -7.9 -7908 9.6 CTCF CEBPG MAFK SP1 KAT8 RXRA CEBPA GATAD2A RXRB CTBP1 TRIP11 BTBD7 GOLGA5 LINC02833 PIR36925 GC14P092880 GC14P092879 GC14P092878 GC14P092353
GH14J092951 Enhancer 1.2 Ensembl ENCODE dbSUPER 5.9 +62.2 62242 2.5 CTCF MYC RAD21 CREB1 ARID2 ZBTB8A RELA ZNF143 REST TRIM22 CHGA LINC02833 PIR52280 ITPK1-AS1 ITPK1
GH14J092958 Enhancer 0.8 Ensembl ENCODE dbSUPER 6.4 +68.8 68797 1.4 SCRT2 SCRT1 POLR2A CHGA LINC02833 PIR52280 ITPK1-AS1 ITPK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02833 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02833 Gene

Genomic Locations for LINC02833 Gene
chr14:92,890,509-92,893,792
(GRCh38/hg38)
Size:
3,284 bases
Orientation:
Plus strand
chr14:93,352,697-93,359,851
(GRCh37/hg19)
Size:
7,155 bases
Orientation:
Plus strand

Genomic View for LINC02833 Gene

Genes around LINC02833 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02833 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02833 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02833 Gene

Proteins for LINC02833 Gene

Post-translational modifications for LINC02833 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02833 Gene

Domains & Families for LINC02833 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02833 Gene

Function for LINC02833 Gene

Phenotypes From GWAS Catalog for LINC02833 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02833 Gene

Localization for LINC02833 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02833 Gene

Pathways & Interactions for LINC02833 Gene

PathCards logo

SuperPathways for LINC02833 Gene

No Data Available

Interacting Proteins for LINC02833 Gene

Gene Ontology (GO) - Biological Process for LINC02833 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02833 Gene

Drugs & Compounds for LINC02833 Gene

No Compound Related Data Available

Transcripts for LINC02833 Gene

mRNA/cDNA for LINC02833 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02833 Gene

No ASD Table

Relevant External Links for LINC02833 Gene

GeneLoc Exon Structure for
LINC02833
ECgene alternative splicing isoforms for
LINC02833

Expression for LINC02833 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02833 Gene

Orthologs for LINC02833 Gene

Evolution for LINC02833 Gene

ENSEMBL:
Gene Tree for LINC02833 (if available)
TreeFam:
Gene Tree for LINC02833 (if available)

No data available for Orthologs for LINC02833 Gene

Paralogs for LINC02833 Gene

No data available for Paralogs for LINC02833 Gene

Variants for LINC02833 Gene

Sequence variations from dbSNP and Humsavar for LINC02833 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000255170 -- 92,892,265(+) G/A intron_variant
rs1000498951 -- 92,891,811(+) G/A non_coding_transcript_variant
rs1000645223 -- 92,890,373(+) G/A upstream_transcript_variant
rs1001487372 -- 92,891,363(+) C/A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001770318 -- 92,891,522(+) C/G/T intron_variant, non_coding_transcript_variant

Additional Variant Information for LINC02833 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02833

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02833 Gene

Disorders for LINC02833 Gene

No disorders were found for LINC02833 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02833 Gene

Publications for LINC02833 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LINC02833 Gene

Products for LINC02833 Gene

Sources for LINC02833 Gene

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