Aliases for LINC02829 Gene

Subcategory (RNA class) for LINC02829 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02829 Gene

  • Long Intergenic Non-Protein Coding RNA 2829 2 3
  • Uncharacterized LOC105375009 5
  • XXbac-BPG13B8.10 3
  • NONHSAG045543 94
  • NONHSAG045835 94
  • NONHSAG046542 94
  • NONHSAG046022 94
  • NONHSAG046183 94
  • NONHSAG043357 94
  • HSALNG0049064 169
  • NONHSAG045644 94
  • NONHSAG046356 94
  • Lnc-OR2H1-7 170
  • AL662860.1 5

External Ids for LINC02829 Gene

Previous GeneCards Identifiers for LINC02829 Gene

  • GC06P032541

Summaries for LINC02829 Gene

GeneCards Summary for LINC02829 Gene

LINC02829 (Long Intergenic Non-Protein Coding RNA 2829) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02829 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02829 Gene

Genomics for LINC02829 Gene

GeneHancer (GH) Regulatory Elements for LINC02829 Gene

Promoters and enhancers for LINC02829 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J029552 Enhancer 0.9 FANTOM5 ENCODE 4.3 +55.3 55273 0.3 SP1 ZBTB40 CREB1 NFYC CEBPB CREM PRDM10 ATF1 SP2 ZNF561 IFITM4P UBD LINC02829 HLA-F HLA-A OR2I1P
GH06J029558 Promoter 0.7 Ensembl 4.3 +61.6 61626 0.6 MLLT1 ZNF740 ZBTB11 EHMT2 GTF2A2 YY1 UBD HLA-J HLA-W ENSG00000237669 LINC02829 OR2I1P GABBR1
GH06J029490 Enhancer 0.9 Ensembl ENCODE 0.4 -6.7 -6716 0.5 SMARCE1 RUNX1 TEAD4 CBFA2T2 SMARCA4 ZNF639 MTA1 IKZF1 HDAC1 EP300 RPS17P1 lnc-MAS1L-2 OR5V1 HLA-E LINC01015 OR2H2 LINC02829
GH06J029516 Enhancer 0.8 Ensembl 0.4 +19.0 18977 0.7 ZNF280D SP7 ZSCAN21 PKNOX1 ZIC2 PRDM10 ZEB2 ZNF629 ZNF692 ZNF561 ZFP57 OR11A1 OR2H1 OR5V1 OR2H2 HLA-W piR-37170-058 LINC02829
GH06J029510 Enhancer 0.6 Ensembl 0.4 +12.8 12826 0.2 CTCF ZIC2 PRDM10 ZNF561 ZBTB48 ZNF366 HIC1 BHLHE40 GLIS1 ZNF398 OR11A1 OR2H1 OR5V1 OR10C1 OR2H2 HLA-W MAS1LP1 piR-37170-058 LINC02829
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02829 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02829 Gene

Genomic Locations for LINC02829 Gene
chr6:29,497,475-29,510,558
(GRCh38/hg38)
Size:
13,084 bases
Orientation:
Plus strand
chr6:29,465,286-29,478,333
(GRCh37/hg19)
Size:
13,048 bases
Orientation:
Plus strand

Genomic View for LINC02829 Gene

Genes around LINC02829 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02829 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02829 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LINC02829 Gene

Post-translational modifications for LINC02829 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02829 Gene

Domains & Families for LINC02829 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02829 Gene

Function for LINC02829 Gene

Phenotypes From GWAS Catalog for LINC02829 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02829 Gene

Localization for LINC02829 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02829 Gene

Pathways & Interactions for LINC02829 Gene

PathCards logo

SuperPathways for LINC02829 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02829 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02829 Gene

Drugs & Compounds for LINC02829 Gene

No Compound Related Data Available

Transcripts for LINC02829 Gene

mRNA/cDNA for LINC02829 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(6) LncBook transcripts :
(9) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02829 Gene

No ASD Table

Relevant External Links for LINC02829 Gene

GeneLoc Exon Structure for
LINC02829
ECgene alternative splicing isoforms for
LINC02829

Expression for LINC02829 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02829 Gene

Orthologs for LINC02829 Gene

Evolution for LINC02829 Gene

ENSEMBL:
Gene Tree for LINC02829 (if available)
TreeFam:
Gene Tree for LINC02829 (if available)

No data available for Orthologs for LINC02829 Gene

Paralogs for LINC02829 Gene

No data available for Paralogs for LINC02829 Gene

Variants for LINC02829 Gene

Sequence variations from dbSNP and Humsavar for LINC02829 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000041070 -- 29,505,776(+) G/A intron_variant
rs1000103737 -- 29,510,948(+) T/C downstream_transcript_variant
rs1000829875 -- 29,510,720(+) G/A downstream_transcript_variant
rs1000880833 -- 29,510,947(+) T/C downstream_transcript_variant
rs1001264093 -- 29,504,815(+) T/C intron_variant

Additional Variant Information for LINC02829 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02829

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02829 Gene

Disorders for LINC02829 Gene

No disorders were found for LINC02829 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02829 Gene

Publications for LINC02829 Gene

No publications were found for LINC02829 Gene.

No data available for External Links for LINC02829 Gene

Products for LINC02829 Gene

Sources for LINC02829 Gene