Aliases for LINC02829 Gene

Subcategory (RNA class) for LINC02829 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02829 Gene

  • Long Intergenic Non-Protein Coding RNA 2829 2 3 5
  • LINC02829 2 5
  • XXbac-BPG13B8.10 3
  • NONHSAG046022.2 91
  • NONHSAG045644.2 91
  • NONHSAG046542.2 91
  • NONHSAG043357.2 91
  • NONHSAG046183.2 91
  • NONHSAG045543.2 91
  • NONHSAG045835.2 91
  • NONHSAG046356.2 91
  • HSALNG0049064 164
  • Lnc-OR2H1-7 165

External Ids for LINC02829 Gene

Previous GeneCards Identifiers for LINC02829 Gene

  • GC06P032541
  • GC06P032698
  • GC06P033518

Summaries for LINC02829 Gene

GeneCards Summary for LINC02829 Gene

LINC02829 (Long Intergenic Non-Protein Coding RNA 2829) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02829 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02829 Gene

Genomics for LINC02829 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02829 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J029552 Enhancer 0.9 FANTOM5 ENCODE 4.4 +55.3 55273 0.3 SP1 CREB1 PRDM10 RFX5 ZNF561 SP2 OSR2 ZBTB40 WT1 OVOL3 TRIM39 HCG18 TRIM26 IFITM4P UBD LINC02829 HLA-F HLA-A OR2I1P MAS1L
GH06J029558 Promoter 0.7 Ensembl 4.3 +61.6 61626 0.6 ZNF740 KAT8 POLR2A YY1 ZBTB11 EHMT2 GTF2A2 MLLT1 UBD HLA-J HLA-W ENSG00000237669 LINC02829 OR2I1P MAS1L GABBR1
GH06J029490 Enhancer 0.9 Ensembl ENCODE 0.4 -6.7 -6716 0.5 IKZF1 JUND MTA1 HDAC1 SOX6 TCF12 EP300 ZNF766 CTBP1 HES1 RPS17P1 lnc-MAS1L-2 OR5V1 LINC01015 OR2H2 MAS1L LINC02829 UBD
GH06J029516 Enhancer 0.8 Ensembl 0.4 +19.0 18977 0.7 PRDM10 ZNF629 ZNF692 ZIC2 ZNF600 ZNF561 SCRT2 ZBTB44 KLF9 ARID3A ZFP57 OR11A1 OR2H1 OR5V1 OR2H2 HLA-W piR-37170-058 LINC02829 MAS1L UBD
GH06J029510 Enhancer 0.6 Ensembl 0.4 +12.8 12826 0.2 PRDM10 ZIC2 ZNF561 RAD21 CTCF ZBTB48 HIC1 BHLHE40 ZNF366 GLIS1 OR11A1 OR2H1 OR5V1 OR10C1 OR2H2 HLA-W MAS1LP1 piR-37170-058 LINC02829 MAS1L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02829 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02829 Gene

Genomic Locations for LINC02829 Gene
chr6:29,497,475-29,510,558
(GRCh38/hg38)
Size:
13,084 bases
Orientation:
Plus strand
chr6:29,465,286-29,478,333
(GRCh37/hg19)
Size:
13,048 bases
Orientation:
Plus strand

Genomic View for LINC02829 Gene

Genes around LINC02829 on UCSC Golden Path with GeneCards custom track
LINC02829 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02829 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02829 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LINC02829 Gene

Post-translational modifications for LINC02829 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02829 Gene

Domains & Families for LINC02829 Gene

Gene Families for LINC02829 Gene

genes like me logo Genes that share domains with LINC02829: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02829 Gene

Function for LINC02829 Gene

Phenotypes From GWAS Catalog for LINC02829 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02829 Gene

Localization for LINC02829 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02829 Gene

Pathways & Interactions for LINC02829 Gene

PathCards logo

SuperPathways for LINC02829 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02829 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02829 Gene

Drugs & Compounds for LINC02829 Gene

No Compound Related Data Available

Transcripts for LINC02829 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02829 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000053841E_9606 lncRNA 877 4

Ensembl: ENST00000412655 (view in UCSC) , ENST00000416126 (view in UCSC) , ENST00000416535 (view in UCSC) , ENST00000427808 (view in UCSC) , ENST00000439971 (view in UCSC) ,

LncBook: HSALNT0103529, HSALNT0103530, HSALNT0103531, HSALNT0103532, HSALNT0103533,

LNCipedia: lnc-OR2H1-7:1,

NONCODE: NONHSAT108524.2, NONHSAT116322.2, NONHSAT116521.2, NONHSAT116874.2, NONHSAT117224.2,

URS0000EF1CEC_9606 lncRNA 913 2

HGNC: 54362,

Ensembl: ENST00000436804 (view in UCSC) ,

URS00008C2958_9606 lncRNA 877 2

Ensembl: ENST00000455823 (view in UCSC) ,

NONCODE: NONHSAT118241.2,

URS0000EEADF3_9606 lncRNA 884 1

Ensembl: ENST00000661850 (view in UCSC) ,

URS00009C3222_9606 lncRNA 877 1

NONCODE: NONHSAT207048.1,

LINC02829 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02829 Gene

No ASD Table

Relevant External Links for LINC02829 Gene

GeneLoc Exon Structure for
LINC02829

No data available for mRNA/cDNA for LINC02829 Gene

Expression for LINC02829 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02829 Gene

Orthologs for LINC02829 Gene

Evolution for LINC02829 Gene

ENSEMBL:
Gene Tree for LINC02829 (if available)
TreeFam:
Gene Tree for LINC02829 (if available)

No data available for Orthologs for LINC02829 Gene

Paralogs for LINC02829 Gene

No data available for Paralogs for LINC02829 Gene

Variants for LINC02829 Gene

Additional dbSNP identifiers (rs#s) for LINC02829 Gene

Additional Variant Information for LINC02829 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02829

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02829 Gene

Disorders for LINC02829 Gene

No disorders were found for LINC02829 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02829 Gene

Publications for LINC02829 Gene

No publications were found for LINC02829 Gene.

No data available for Mastermind for LINC02829 Gene

Products for LINC02829 Gene

Sources for LINC02829 Gene