LINC02828 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2828

GC06P024722
GIFtS:
8
See more...

Aliases for LINC02828 Gene

Subcategory (RNA class) for LINC02828 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02828 Gene

  • Long Intergenic Non-Protein Coding RNA 2828 2 3 5
  • LINC02828 2 5
  • NONHSAG043184.2 91
  • HSALNG0048630 164
  • Lnc-ACOT13-4 165
  • Lnc-GMNN-2 165

External Ids for LINC02828 Gene

Previous GeneCards Identifiers for LINC02828 Gene

  • GC06P024744

Summaries for LINC02828 Gene

GeneCards Summary for LINC02828 Gene

LINC02828 (Long Intergenic Non-Protein Coding RNA 2828) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02828 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02828 Gene

Genomics for LINC02828 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02828 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J024715 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -2.0 -1999 7 RNF2 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 REST ZNF629 TFE3 C6orf62 LINC02828 lnc-ACOT13-3 TDP2 ENSG00000272402 ACOT13 KIAA0319
GH06J024742 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.4 +22.2 22226 2.6 JUND FOXA1 PRDM1 RELA ZNF24 IKZF2 DPF2 HDAC1 YY1 PKNOX1 C6orf62 GMNN KIAA0319 TDP2 KRT8P43 ENSG00000218806 lnc-C6orf62-2 piR-32023-205 LINC02828
GH06J024749 Promoter 0.5 Ensembl 0.3 +28.2 28181 0.6 MCM5 SPI1 ENSG00000219682 C6orf62 ENSG00000218806 lnc-C6orf62-2 piR-32023-205 GMNN LINC02828
GH06J024738 Enhancer 0.3 Ensembl 0.4 +17.7 17681 0.8 PKNOX1 MCM5 KIAA0319 GMNN ENSG00000219682 TDP2 piR-32023-205 ENSG00000218806 lnc-C6orf62-2 LINC02828 C6orf62
GH06J024744 Enhancer 0.3 FANTOM5 0.4 +23.9 23926 0.6 GMNN C6orf62 TDP2 ENSG00000218806 lnc-C6orf62-2 piR-32023-205 LINC02828
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02828 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02828 Gene

Genomic Locations for LINC02828 Gene
chr6:24,721,320-24,751,960
(GRCh38/hg38)
Size:
30,641 bases
Orientation:
Plus strand
chr6:24,742,530-24,752,149
(GRCh37/hg19)
Size:
9,620 bases
Orientation:
Plus strand

Genomic View for LINC02828 Gene

Genes around LINC02828 on UCSC Golden Path with GeneCards custom track
LINC02828 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02828 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02828 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02828 Gene

Proteins for LINC02828 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02828 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02828 Gene

Domains & Families for LINC02828 Gene

Gene Families for LINC02828 Gene

HGNC:
genes like me logo Genes that share domains with LINC02828: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02828 Gene

Function for LINC02828 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02828 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02828 Gene

Localization for LINC02828 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02828 Gene

Pathways & Interactions for LINC02828 Gene

PathCards logo

SuperPathways for LINC02828 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02828 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02828 Gene

Drugs & Compounds for LINC02828 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02828 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02828 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000397DBE_9606 lncRNA 555 4

Ensembl: ENST00000453179 (view in UCSC) ,

LncBook: HSALNT0102672,

LNCipedia: lnc-GMNN-2:1,

NONCODE: NONHSAT108121.2,

URS0000EF00AB_9606 lncRNA 813 2

HGNC: 54359,

Ensembl: ENST00000665572 (view in UCSC) ,

URS0000EEDCE1_9606 lncRNA 634 1

Ensembl: ENST00000668439 (view in UCSC) ,

URS0000EEC64D_9606 lncRNA 599 1

Ensembl: ENST00000423504 (view in UCSC) ,

URS00009BE4E1_9606 lncRNA 557 2

LncBook: HSALNT0102673,

NONCODE: NONHSAT206968.1,

LINC02828 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02828 Gene

No ASD Table

Relevant External Links for LINC02828 Gene

GeneLoc Exon Structure for
LINC02828

No data available for mRNA/cDNA for LINC02828 Gene

Expression for LINC02828 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02828 Gene

Orthologs for LINC02828 Gene

Evolution for LINC02828 Gene

ENSEMBL:
Gene Tree for LINC02828 (if available)
TreeFam:
Gene Tree for LINC02828 (if available)

No data available for Orthologs for LINC02828 Gene

Paralogs for LINC02828 Gene

No data available for Paralogs for LINC02828 Gene

Variants for LINC02828 Gene

Additional dbSNP identifiers (rs#s) for LINC02828 Gene

Additional Variant Information for LINC02828 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02828

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02828 Gene

Disorders for LINC02828 Gene

No disorders were found for LINC02828 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02828 Gene

Publications for LINC02828 Gene

No publications were found for LINC02828 Gene.

No data available for Mastermind for LINC02828 Gene

Products for LINC02828 Gene

Sources for LINC02828 Gene