Aliases for LINC02827 Gene

Subcategory (RNA class) for LINC02827 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02827 Gene

  • Long Intergenic Non-Protein Coding RNA 2827 2 3 5
  • NONHSAG010215 92
  • HSALNG0088648 167
  • Lnc-TSPAN9-1 168
  • LINC02827 2

External Ids for LINC02827 Gene

Summaries for LINC02827 Gene

GeneCards Summary for LINC02827 Gene

LINC02827 (Long Intergenic Non-Protein Coding RNA 2827) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02827 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02827 Gene

Genomics for LINC02827 Gene

GeneHancer (GH) Regulatory Elements for LINC02827 Gene

Promoters and enhancers for LINC02827 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J003299 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 507.9 0.0 -40 1.8 CTCF FOS ZNF10 ZIC2 CLOCK GABPA TRIM28 REST KLF4 RAD21 LINC02827 ENSG00000287712 piR-59153 ENSG00000250770 LOC100128253-001
GH12J003310 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 6.5 +13.0 13037 6.4 ZNF217 CTCF FOS ZIC2 CTBP1 ZNF341 SIN3A ESRRA SMC3 MBD2 LINC02827 PRMT8 ENSG00000287712 lnc-CRACR2A-9 ENSG00000250770 LOC100128253-001
GH12J003295 Enhancer 0.8 Ensembl ENCODE 9.9 -5.4 -5362 3.2 ZNF10 MXI1 ZNF341 CTCF POLR2A SCRT1 RCOR1 PRDM10 GLIS1 ZNF398 LINC02827 piR-59153 ENSG00000250770 LOC100128253-001
GH12J003272 Enhancer 1 Ensembl ENCODE dbSUPER 5.3 -26.3 -26312 3.7 CTCF ZFX GABPA REST RAD21 TRIM22 SMC3 ZBTB17 YY1 MBD1 TSPAN9 LINC02827 piR-59153
GH12J003278 Enhancer 0.6 dbSUPER 7.3 -20.1 -20130 4.4 USF1 MXI1 KLF17 RCOR1 MITF KLF1 MAFK ZBTB12 CHD2 GATA2 TSPAN9 LINC02827 piR-59153
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02827 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02827 Gene

Genomic Locations for LINC02827 Gene
chr12:3,300,363-3,345,052
(GRCh38/hg38)
Size:
44,690 bases
Orientation:
Plus strand
chr12:3,427,884-3,434,509
(GRCh37/hg19)
Size:
6,626 bases
Orientation:
Plus strand

Genomic View for LINC02827 Gene

Genes around LINC02827 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02827 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02827 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02827 Gene

Proteins for LINC02827 Gene

Post-translational modifications for LINC02827 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02827 Gene

Domains & Families for LINC02827 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02827 Gene

Function for LINC02827 Gene

Phenotypes From GWAS Catalog for LINC02827 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02827 Gene

Localization for LINC02827 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02827 Gene

Pathways & Interactions for LINC02827 Gene

PathCards logo

SuperPathways for LINC02827 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02827 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02827 Gene

Drugs & Compounds for LINC02827 Gene

No Compound Related Data Available

Transcripts for LINC02827 Gene

mRNA/cDNA for LINC02827 Gene

9 RNACentral transcripts :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
8 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02827 Gene

No ASD Table

Relevant External Links for LINC02827 Gene

GeneLoc Exon Structure for
LINC02827

Expression for LINC02827 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02827 Gene

Orthologs for LINC02827 Gene

Evolution for LINC02827 Gene

ENSEMBL:
Gene Tree for LINC02827 (if available)
TreeFam:
Gene Tree for LINC02827 (if available)

No data available for Orthologs for LINC02827 Gene

Paralogs for LINC02827 Gene

No data available for Paralogs for LINC02827 Gene

Variants for LINC02827 Gene

Additional dbSNP identifiers (rs#s) for LINC02827 Gene

Additional Variant Information for LINC02827 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02827

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02827 Gene

Disorders for LINC02827 Gene

No disorders were found for LINC02827 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02827 Gene

Publications for LINC02827 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LINC02827 Gene

Products for LINC02827 Gene

Sources for LINC02827 Gene