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Aliases for LINC02827 Gene

Subcategory (RNA class) for LINC02827 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02827 Gene

  • Long Intergenic Non-Protein Coding RNA 2827 2 3
  • Novel Transcript 5
  • AC005865.1 5

External Ids for LINC02827 Gene

Summaries for LINC02827 Gene

GeneCards Summary for LINC02827 Gene

LINC02827 (Long Intergenic Non-Protein Coding RNA 2827) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02827 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02827 Gene

Genomics for LINC02827 Gene

GeneHancer (GH) Regulatory Elements for LINC02827 Gene

Promoters and enhancers for LINC02827 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J003313 Enhancer 1.1 Ensembl ENCODE dbSUPER 606.7 -0.9 -923 3.2 CTCF TARDBP ZSCAN4 CTBP1 MNT ESRRA FOS ZNF217 SMC3 DPF2 LINC02827 GC12M003283 ENSG00000250770
GH12J003317 Enhancer 0.4 Ensembl dbSUPER 600.7 +1.4 1360 0.2 LINC02827 LOC100418939 ENSG00000250770
GH12J003299 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 7.6 -15.4 -15418 1.8 CTCF ZSCAN21 MAFK CREM RAD21 FOSL2 CREB1 ZNF600 ZIC2 TARDBP ITFG2 LINC02827 GC12M003283 ENSG00000250770
GH12J003295 Enhancer 0.8 Ensembl ENCODE 6.2 -20.7 -20740 2.8 PRDM10 ZNF341 SCRT2 ZNF10 SCRT1 POLR2A RCOR1 GLIS1 ZNF398 GFI1B LINC02827 GC12M003283 ENSG00000250770
GH12J003275 Enhancer 0.8 ENCODE dbSUPER 5 -40.1 -40131 0.2 CTCF RAD21 REST TRIM22 MBD1 ZBTB17 SMC3 ZNF654 ZNF143 ETV5 TSPAN9 LINC02827 GC12M003283 PIR53152 GC12P003266
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02827 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02827 Gene

Genomic Locations for LINC02827 Gene
chr12:3,315,741-3,323,452
(GRCh38/hg38)
Size:
7,712 bases
Orientation:
Plus strand
chr12:3,427,884-3,434,509
(GRCh37/hg19)
Size:
6,626 bases
Orientation:
Plus strand

Genomic View for LINC02827 Gene

Genes around LINC02827 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02827 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02827 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02827 Gene

Proteins for LINC02827 Gene

Post-translational modifications for LINC02827 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02827 Gene

Domains & Families for LINC02827 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02827 Gene

Function for LINC02827 Gene

Phenotypes From GWAS Catalog for LINC02827 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02827 Gene

Localization for LINC02827 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02827 Gene

Pathways & Interactions for LINC02827 Gene

PathCards logo

SuperPathways for LINC02827 Gene

No Data Available

Interacting Proteins for LINC02827 Gene

Gene Ontology (GO) - Biological Process for LINC02827 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02827 Gene

Drugs & Compounds for LINC02827 Gene

No Compound Related Data Available

Transcripts for LINC02827 Gene

mRNA/cDNA for LINC02827 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02827 Gene

No ASD Table

Relevant External Links for LINC02827 Gene

GeneLoc Exon Structure for
LINC02827
ECgene alternative splicing isoforms for
LINC02827

Expression for LINC02827 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02827 Gene

Orthologs for LINC02827 Gene

Evolution for LINC02827 Gene

ENSEMBL:
Gene Tree for LINC02827 (if available)
TreeFam:
Gene Tree for LINC02827 (if available)

No data available for Orthologs for LINC02827 Gene

Paralogs for LINC02827 Gene

No data available for Paralogs for LINC02827 Gene

Variants for LINC02827 Gene

Sequence variations from dbSNP and Humsavar for LINC02827 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000160167 -- 3,316,619(+) C/G intron_variant
rs1000531735 -- 3,308,942(+) G/ intron_variant
rs1000535895 -- 3,312,802(+) A/G intron_variant
rs1000580444 -- 3,298,112(+) C/A upstream_transcript_variant
rs1000739653 -- 3,313,695(+) G/A intron_variant

Additional Variant Information for LINC02827 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02827

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02827 Gene

Disorders for LINC02827 Gene

No disorders were found for LINC02827 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02827 Gene

Publications for LINC02827 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LINC02827 Gene

Products for LINC02827 Gene

Sources for LINC02827 Gene

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