Aliases for LINC02825 Gene

Data sources for LINC02825 Gene:

RNA type for LINC02825 Gene

lncRNA

Aliases for LINC02825 Gene

External Ids for LINC02825 Gene

Previous GeneCards Identifiers for LINC02825 Gene

  • GC12U902881

Summaries for LINC02825 Gene

GeneCards Summary for LINC02825 Gene

LINC02825 (Long Intergenic Non-Protein Coding RNA 2825) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02825 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02825 Gene

Genomics for LINC02825 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02825 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J126418 Enhancer 0.2 Ensembl 0.3 +30.2 30235 1 LINC02350 HSALNG0094945 LINC02825 LOC101927531 LOC107984449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02825 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02825 Gene

Latest Assembly
chr12:126,400,791-126,449,336
(GRCh38/hg38)
Size:
48,546 bases
Orientation:
Minus strand

Previous Assembly
chr12:126,885,338-126,933,873
(GRCh37/hg19 by Entrez Gene)
Size:
48,536 bases
Orientation:
Minus strand

chr12:126,885,338-126,890,074
(GRCh37/hg19 by Ensembl)
Size:
4,737 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr12(ALT_REF_LOCI_1):179,637-180,542 (-)

Genomic View for LINC02825 Gene

Genes around LINC02825 on UCSC Golden Path with GeneCards custom track
LINC02825 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02825 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02825 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02825 Gene

Proteins for LINC02825 Gene

Post-translational modifications for LINC02825 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02825 Gene

Domains & Families for LINC02825 Gene

Gene Families for LINC02825 Gene

genes like me logo Genes that share domains with LINC02825: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02825 Gene

Function for LINC02825 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02825 Gene

Localization for LINC02825 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02825 Gene

Pathways & Interactions for LINC02825 Gene

PathCards logo

SuperPathways for LINC02825 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02825 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02825 Gene

Drugs & Compounds for LINC02825 Gene

No Compound Related Data Available

Transcripts for LINC02825 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02825 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008B2436_9606 lncRNA 1233 3

RefSeq: NR_147498,

LNCipedia: lnc-DHX37-6:2,

NONCODE: NONHSAT031773.2,

URS000016BA76_9606 lncRNA 974 2

Ensembl: ENST00000536422 (view in UCSC) ,

LNCipedia: lnc-DHX37-6:1,

URS00008BD441_9606 lncRNA 488 3

LncBook: HSALNT0196855,

LNCipedia: lnc-DHX37-6:3,

NONCODE: NONHSAT031780.2,

URS0001BD2780_9606 lncRNA 486 1

LncBook: HSALNT0196855,

LINC02825 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02825 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02825 Gene

No ASD Table

Relevant External Links for LINC02825 Gene

GeneLoc Exon Structure for
LINC02825

Expression for LINC02825 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02825

SOURCE GeneReport for Unigene cluster for LINC02825 Gene:

Hs.667334
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02825 Gene

Orthologs for LINC02825 Gene

Evolution for LINC02825 Gene

ENSEMBL:
Gene Tree for LINC02825 (if available)
TreeFam:
Gene Tree for LINC02825 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02825

No data available for Orthologs for LINC02825 Gene

Paralogs for LINC02825 Gene

No data available for Paralogs for LINC02825 Gene

Variants for LINC02825 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02825 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02825 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02825
Leiden Open Variation Database (LOVD)
LINC02825

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02825 Gene

Disorders for LINC02825 Gene

No disorders were found for LINC02825 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02825 Gene

Publications for LINC02825 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02825 Gene

Products for LINC02825 Gene

Sources for LINC02825 Gene