Aliases for LINC02822 Gene

Subcategory (RNA class) for LINC02822 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02822 Gene

  • Long Intergenic Non-Protein Coding RNA 2822 2 3 5
  • LINC02822 2 5
  • NONHSAG011879.2 91
  • Lnc-C12orf74-10 165
  • Lnc-C12orf74-9 165
  • HSALNG0092976 164
  • HSALNG0092990 164

External Ids for LINC02822 Gene

Previous GeneCards Identifiers for LINC02822 Gene

  • GC12P090676

Summaries for LINC02822 Gene

GeneCards Summary for LINC02822 Gene

LINC02822 (Long Intergenic Non-Protein Coding RNA 2822) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02822 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02822 Gene

Genomics for LINC02822 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02822 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J090622 Enhancer 0.6 Ensembl ENCODE 0.3 +46.5 46475 0.6 NFE2 FOS MAFK NFE2L2 BACH1 ENSG00000257995 LINC02822 ENSG00000288102 CCER1 ATP2B1
GH12J090547 Enhancer 0.3 Ensembl 0.3 -29.1 -29125 0.2 PRDM1 HSALNG0092979 LINC02822 CCER1 ATP2B1
GH12J090627 Enhancer 0.3 Ensembl 0.2 +51.3 51275 0.6 RUNX3 ATF2 ENSG00000257995 piR-60146-029 LINC02822 ENSG00000288102 CCER1 ATP2B1
GH12J090729 Enhancer 0.4 Ensembl ENCODE 0.1 +153.6 153575 0.4 JUND lnc-C12orf74-17 piR-47162-038 ENSG00000288102 LINC02822 CCER1
GH12J090623 Enhancer 0.2 ENCODE 0.3 +45.9 45913 0.2 ENSG00000257995 LINC02822 ENSG00000288102 CCER1 ATP2B1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02822 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02822 Gene

Genomic Locations for LINC02822 Gene
chr12:90,576,226-90,889,917
(GRCh38/hg38)
Size:
313,692 bases
Orientation:
Plus strand

Genomic View for LINC02822 Gene

Genes around LINC02822 on UCSC Golden Path with GeneCards custom track
LINC02822 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02822 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02822 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02822 Gene

Proteins for LINC02822 Gene

Post-translational modifications for LINC02822 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02822 Gene

Domains & Families for LINC02822 Gene

Gene Families for LINC02822 Gene

genes like me logo Genes that share domains with LINC02822: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02822 Gene

Function for LINC02822 Gene

Phenotypes From GWAS Catalog for LINC02822 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02822 Gene

Localization for LINC02822 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02822 Gene

Pathways & Interactions for LINC02822 Gene

PathCards logo

SuperPathways for LINC02822 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02822 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02822 Gene

Drugs & Compounds for LINC02822 Gene

No Compound Related Data Available

Transcripts for LINC02822 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02822 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF57B8_9606 lncRNA 5232 2

HGNC: 54353,

Ensembl: ENST00000656065 (view in UCSC) ,

URS0000EF34C7_9606 lncRNA 3218 1

Ensembl: ENST00000661507 (view in UCSC) ,

URS0000EF120F_9606 lncRNA 2756 1

Ensembl: ENST00000664727 (view in UCSC) ,

URS0000EEE745_9606 lncRNA 2489 1

Ensembl: ENST00000667652 (view in UCSC) ,

URS0000EF0F9F_9606 lncRNA 2269 1

Ensembl: ENST00000668008 (view in UCSC) ,

LINC02822 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02822 Gene

No ASD Table

Relevant External Links for LINC02822 Gene

GeneLoc Exon Structure for
LINC02822

No data available for mRNA/cDNA for LINC02822 Gene

Expression for LINC02822 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02822 Gene

Orthologs for LINC02822 Gene

Evolution for LINC02822 Gene

ENSEMBL:
Gene Tree for LINC02822 (if available)
TreeFam:
Gene Tree for LINC02822 (if available)

No data available for Orthologs for LINC02822 Gene

Paralogs for LINC02822 Gene

No data available for Paralogs for LINC02822 Gene

Variants for LINC02822 Gene

Additional dbSNP identifiers (rs#s) for LINC02822 Gene

Additional Variant Information for LINC02822 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02822

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02822 Gene

Disorders for LINC02822 Gene

No disorders were found for LINC02822 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02822 Gene

Publications for LINC02822 Gene

No publications were found for LINC02822 Gene.

No data available for Mastermind for LINC02822 Gene

Products for LINC02822 Gene

Sources for LINC02822 Gene