Aliases for LINC02821 Gene

Subcategory (RNA class) for LINC02821 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02821 Gene

  • Long Intergenic Non-Protein Coding RNA 2821 2 3 5
  • LINC02821 2 5
  • NONHSAG011655.2 91
  • HSALNG0092300 164
  • Lnc-CNOT2-1 165

External Ids for LINC02821 Gene

Summaries for LINC02821 Gene

GeneCards Summary for LINC02821 Gene

LINC02821 (Long Intergenic Non-Protein Coding RNA 2821) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02821 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02821 Gene

Genomics for LINC02821 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02821 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J070180 Promoter 0.4 EPDnew 600.7 +0.7 702 0.1 HNF4A LINC02821 CNOT2 piR-32677-107 PRANCR MYRFL
GH12J070178 Enhancer 0.4 FANTOM5 600.7 -1.4 -1401 0.2 POLR2A SMARCA4 LINC02821 piR-53338-032 CNOT2 PRANCR MYRFL
GH12J070241 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 7.9 +64.1 64061 4.2 CREB1 GATAD2A PRDM10 REST ZNF629 ZNF512 SIX5 LEF1 IKZF1 NFKBIZ CNOT2 PRANCR KCNMB4 PTPRR FRS2 LINC02821 ENSG00000257613 ENSG00000287132
GH12J070196 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 13.4 +17.4 17375 2 CEBPB POLR2A ZNF335 MAFK SMARCA4 LINC02821 ENSG00000257613 PRANCR piR-32677-107 CNOT2 MYRFL
GH12J070052 Enhancer 1.1 Ensembl ENCODE 7.9 -126.2 -126225 2.8 CEBPG CREB1 GATAD2A ATF7 PRDM10 ZNF629 LEF1 SOX13 IKZF1 ZNF692 KCNMB4 PTPRR LINC02821 ENSG00000257613 CNOT2 piR-46134-005 piR-33432-122 PRANCR MYRFL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02821 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02821 Gene

Genomic Locations for LINC02821 Gene
chr12:70,179,626-70,202,004
(GRCh38/hg38)
Size:
22,379 bases
Orientation:
Plus strand
chr12:70,574,118-70,595,784
(GRCh37/hg19)
Size:
21,667 bases
Orientation:
Plus strand

Genomic View for LINC02821 Gene

Genes around LINC02821 on UCSC Golden Path with GeneCards custom track
LINC02821 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02821 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02821 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02821 Gene

Proteins for LINC02821 Gene

Post-translational modifications for LINC02821 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02821 Gene

Domains & Families for LINC02821 Gene

Gene Families for LINC02821 Gene

genes like me logo Genes that share domains with LINC02821: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02821 Gene

Function for LINC02821 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02821 Gene

Localization for LINC02821 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02821 Gene

Pathways & Interactions for LINC02821 Gene

PathCards logo

SuperPathways for LINC02821 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02821 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02821 Gene

Drugs & Compounds for LINC02821 Gene

No Compound Related Data Available

Transcripts for LINC02821 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02821 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000287EA1_9606 lncRNA 578 5

HGNC: 54352,

Ensembl: ENST00000552324 (view in UCSC) ,

LncBook: HSALNT0191187,

LNCipedia: lnc-CNOT2-1:1,

NONCODE: NONHSAT029391.2,

URS0000D57649_9606 lncRNA 1768 2

LncBook: HSALNT0191189,

LNCipedia: lnc-CNOT2-1:4,

URS0000D5A828_9606 lncRNA 634 2

LncBook: HSALNT0191188,

LNCipedia: lnc-CNOT2-1:2,

URS0000D571C5_9606 lncRNA 2880 1

LNCipedia: lnc-CNOT2-1:3,

URS0000D59AF9_9606 lncRNA 569 1

LNCipedia: lnc-CNOT2-1:5,

LINC02821 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02821 Gene

No ASD Table

Relevant External Links for LINC02821 Gene

GeneLoc Exon Structure for
LINC02821

No data available for mRNA/cDNA for LINC02821 Gene

Expression for LINC02821 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02821 Gene

Orthologs for LINC02821 Gene

Evolution for LINC02821 Gene

ENSEMBL:
Gene Tree for LINC02821 (if available)
TreeFam:
Gene Tree for LINC02821 (if available)

No data available for Orthologs for LINC02821 Gene

Paralogs for LINC02821 Gene

No data available for Paralogs for LINC02821 Gene

Variants for LINC02821 Gene

Additional dbSNP identifiers (rs#s) for LINC02821 Gene

Additional Variant Information for LINC02821 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02821

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02821 Gene

Disorders for LINC02821 Gene

Additional Disease Information for LINC02821

No disorders were found for LINC02821 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02821 Gene

Publications for LINC02821 Gene

No publications were found for LINC02821 Gene.

No data available for Mastermind for LINC02821 Gene

Products for LINC02821 Gene

Sources for LINC02821 Gene