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Aliases for LINC02820 Gene

Subcategory (RNA class) for LINC02820 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC02820 Gene

  • Long Intergenic Non-Protein Coding RNA 2820 2 3
  • Novel Transcript 5
  • AC131532.1 5

External Ids for LINC02820 Gene

Summaries for LINC02820 Gene

GeneCards Summary for LINC02820 Gene

LINC02820 (Long Intergenic Non-Protein Coding RNA 2820) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02820 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02820 Gene

Genomics for LINC02820 Gene

GeneHancer (GH) Regulatory Elements for LINC02820 Gene

Promoters and enhancers for LINC02820 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J085317 Promoter 0.6 Ensembl 605.6 +0.2 241 1.4 FOXA1 LINC02820 GC12P085312 GC12M085364
GH12J085279 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE 4.4 -37.2 -37159 3.4 ZNF384 ZSCAN21 SP7 PRDM1 MZF1 CREB1 GLIS2 PKNOX1 ZBTB8A ZNF600 ALX1 LINC02820 GC12P085312
GH12J085324 Enhancer 0.5 Ensembl 4.7 +6.9 6941 1.2 MZF1 ZNF341 HNF4A ZBTB6 LINC02820 GC12M085364
GH12J085305 Enhancer 0.3 Ensembl 4.6 -12.1 -12059 0.8 PRDM6 ALX1 LINC02820 GC12P085312
GH12J085350 Enhancer 0.6 Ensembl 0.3 +32.6 32589 0.7 ZNF384 PKNOX1 RXRA POLR2A ZBTB44 WT1 ZNF18 GLIS1 PRDM6 GC12M085364 LINC02820 GC12M085332
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02820 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02820 Gene

Genomic Locations for LINC02820 Gene
36,998 bases
Plus strand
24,853 bases
Plus strand

Genomic View for LINC02820 Gene

Genes around LINC02820 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02820 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02820 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02820 Gene

Proteins for LINC02820 Gene

Post-translational modifications for LINC02820 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02820 Gene

Domains & Families for LINC02820 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02820 Gene

Function for LINC02820 Gene

Phenotypes From GWAS Catalog for LINC02820 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02820 Gene

Localization for LINC02820 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02820 Gene

Pathways & Interactions for LINC02820 Gene

PathCards logo

SuperPathways for LINC02820 Gene

No Data Available

Interacting Proteins for LINC02820 Gene

Gene Ontology (GO) - Biological Process for LINC02820 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC02820 Gene

Drugs & Compounds for LINC02820 Gene

No Compound Related Data Available

Transcripts for LINC02820 Gene

mRNA/cDNA for LINC02820 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02820 Gene

No ASD Table

Relevant External Links for LINC02820 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC02820 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02820 Gene

Orthologs for LINC02820 Gene

Evolution for LINC02820 Gene

Gene Tree for LINC02820 (if available)
Gene Tree for LINC02820 (if available)

No data available for Orthologs for LINC02820 Gene

Paralogs for LINC02820 Gene

No data available for Paralogs for LINC02820 Gene

Variants for LINC02820 Gene

Sequence variations from dbSNP and Humsavar for LINC02820 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000000516 -- 85,514,651(+) C/A intron_variant
rs1000023696 -- 85,371,929(+) G/A intron_variant
rs1000033294 -- 85,463,891(+) C/T intron_variant
rs1000041165 -- 85,560,524(+) A/T intron_variant
rs1000070208 -- 85,328,658(+) T/C genic_upstream_transcript_variant, intron_variant

Additional Variant Information for LINC02820 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02820 Gene

Disorders for LINC02820 Gene

No disorders were found for LINC02820 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02820 Gene

Publications for LINC02820 Gene

  1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. (PMID: 29954144) Majewska M … Majewski MK (International journal of molecular sciences 2018) 3 58

No data available for External Links for LINC02820 Gene

Products for LINC02820 Gene

Sources for LINC02820 Gene

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