Aliases for LINC02820 Gene

Subcategory (RNA class) for LINC02820 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC02820 Gene

  • Long Intergenic Non-Protein Coding RNA 2820 2 3 5
  • LINC02820 2 5
  • NONHSAG011835.2 91
  • NONHSAG011836.2 91
  • HSALNG0092808 164
  • Lnc-ALX1-2 165

External Ids for LINC02820 Gene

Summaries for LINC02820 Gene

GeneCards Summary for LINC02820 Gene

LINC02820 (Long Intergenic Non-Protein Coding RNA 2820) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02820 include Bladder Cancer.

Additional gene information for LINC02820 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02820 Gene

Genomics for LINC02820 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02820 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J085317 Promoter 0.6 Ensembl 605.6 +0.4 382 1.6 FOXA1 ZNF366 YY1 LINC02820 piR-33605-119 ALX1 piR-55905-006 RASSF9
GH12J085279 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 4.4 -37.0 -37018 3.6 CREB1 PRDM10 ZNF629 ZNF692 PRDM1 ZIC2 POLR2A PATZ1 REST ZNF501 ALX1 LINC02820 MN309174-123 RASSF9
GH12J085325 Enhancer 0.3 Ensembl 4.7 +7.0 6982 0.4 HNF4A LINC02820 ALX1 piR-55905-006 RASSF9
GH12J085305 Enhancer 0.3 Ensembl 4.6 -12.0 -12018 0.8 PRDM6 ALX1 LINC02820 MN309174-123 RASSF9
GH12J085468 Promoter/Enhancer 1.3 ENCODE CraniofacialAtlas 0.1 +151.2 151245 2 GATAD2A CTCF PRDM10 ZNF143 PATZ1 RAD21 TRIM22 SCRT2 ZBTB44 ZNF524 LOC107984537 lnc-RASSF9-2 RASSF9 piR-55905-006 LINC02820 ALX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02820 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02820 Gene

Genomic Locations for LINC02820 Gene
chr12:85,318,019-85,594,595
(GRCh38/hg38)
Size:
276,577 bases
Orientation:
Plus strand
chr12:85,711,838-85,736,690
(GRCh37/hg19)
Size:
24,853 bases
Orientation:
Plus strand

Genomic View for LINC02820 Gene

Genes around LINC02820 on UCSC Golden Path with GeneCards custom track
LINC02820 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02820 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02820 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02820 Gene

Proteins for LINC02820 Gene

Post-translational modifications for LINC02820 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02820 Gene

Domains & Families for LINC02820 Gene

Gene Families for LINC02820 Gene

genes like me logo Genes that share domains with LINC02820: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02820 Gene

Function for LINC02820 Gene

Phenotypes From GWAS Catalog for LINC02820 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02820 Gene

Localization for LINC02820 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02820 Gene

Pathways & Interactions for LINC02820 Gene

PathCards logo

SuperPathways for LINC02820 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02820 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02820 Gene

Drugs & Compounds for LINC02820 Gene

No Compound Related Data Available

Transcripts for LINC02820 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02820 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000F129B_9606 lncRNA 519 4

HGNC: 54351,

Ensembl: ENST00000555596 (view in UCSC) ,

LNCipedia: lnc-ALX1-2:5,

NONCODE: NONHSAT029748.2,

URS00008B4817_9606 lncRNA 1074 3

LncBook: HSALNT0192332,

LNCipedia: lnc-ALX1-2:4,

NONCODE: NONHSAT029751.2,

URS00008BE9F6_9606 lncRNA 883 3

LncBook: HSALNT0192325,

LNCipedia: lnc-ALX1-2:6,

NONCODE: NONHSAT029749.2,

URS00008BD229_9606 lncRNA 596 3

LncBook: HSALNT0192334,

LNCipedia: lnc-ALX1-2:1,

NONCODE: NONHSAT029753.2,

URS00008B592E_9606 lncRNA 435 3

LncBook: HSALNT0192331,

LNCipedia: lnc-ALX1-2:3,

NONCODE: NONHSAT029750.2,

LINC02820 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02820 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02820 Gene

No ASD Table

Relevant External Links for LINC02820 Gene

GeneLoc Exon Structure for
LINC02820

Expression for LINC02820 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02820

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02820 Gene

Orthologs for LINC02820 Gene

Evolution for LINC02820 Gene

ENSEMBL:
Gene Tree for LINC02820 (if available)
TreeFam:
Gene Tree for LINC02820 (if available)

No data available for Orthologs for LINC02820 Gene

Paralogs for LINC02820 Gene

No data available for Paralogs for LINC02820 Gene

Variants for LINC02820 Gene

Additional dbSNP identifiers (rs#s) for LINC02820 Gene

Additional Variant Information for LINC02820 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02820

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02820 Gene

Disorders for LINC02820 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02820 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02820

genes like me logo Genes that share disorders with LINC02820: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02820 Gene

Publications for LINC02820 Gene

  1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. (PMID: 29954144) Majewska M … Majewski MK (International journal of molecular sciences 2018) 3

No data available for Mastermind for LINC02820 Gene

Products for LINC02820 Gene

Sources for LINC02820 Gene