LINC02817 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2817

GC01M221330
GIFtS:
10
See more...

Aliases for LINC02817 Gene

Data sources for LINC02817 Gene:

Subcategory (RNA class) for LINC02817 Gene

lncRNA

Aliases for LINC02817 Gene

External Ids for LINC02817 Gene

Previous HGNC Symbols for LINC02817 Gene

  • C1orf140

Summaries for LINC02817 Gene

GeneCards Summary for LINC02817 Gene

LINC02817 (Long Intergenic Non-Protein Coding RNA 2817) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02817 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02817 Gene

Genomics for LINC02817 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02817 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J221334 Enhancer 1 Ensembl ENCODE 260.1 +1.3 1288 3.6 FEZF1 ZEB1 CEBPB VEZF1 EP300 RXRA PRDM1 RAD21 ZNF843 FOXA2 LINC02817 MARK1 piR-53518-001 LOC105372932 ENSG00000286398 HSALNG0010795 DUSP10 HLX
GH01J221392 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.7 -57.4 -57352 3.2 ZSCAN16 FEZF1 DEK BRCA1 ZEB1 CEBPB ZNF639 MAX EP300 RAD21 LINC02817 HSALNG0010797 piR-61289-006 LOC105372932 ENSG00000286398 HSALNG0010795 DUSP10 HLX
GH01J221315 Enhancer 0.6 Ensembl ENCODE 9.8 +20.9 20889 1.2 CEBPB RFX5 TBP JUND PRDM10 piR-53518-001 LINC02817 LOC105372932 ENSG00000286398 HSALNG0010795 DUSP10 HLX
GH01J221283 Enhancer 0.9 Ensembl ENCODE 4.5 +52.6 52551 1.1 FEZF1 ZNF513 ZNF341 ZNF132 ZNF843 BCL11B PRDM6 ZNF571 GLI4 ZNF624 piR-39098-020 LINC02817 lnc-HLX-4 HLX DUSP10
GH01J221309 Enhancer 0.4 FANTOM5 9.8 +27.3 27252 0.2 PKNOX1 ZNF680 MZF1 LINC02817 piR-53518-001 LOC105372932 HSALNG0010795 ENSG00000286398 DUSP10 HLX
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02817 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02817 Gene

Latest Assembly
chr1:221,295,721-221,336,489
(GRCh38/hg38)
Size:
40,769 bases
Orientation:
Minus strand

Previous Assembly
chr1:221,503,270-221,509,638
(GRCh37/hg19 by Entrez Gene)
Size:
6,369 bases
Orientation:
Minus strand

chr1:221,503,422-221,509,638
(GRCh37/hg19 by Ensembl)
Size:
6,217 bases
Orientation:
Minus strand

Genomic View for LINC02817 Gene

Genes around LINC02817 on UCSC Golden Path with GeneCards custom track
LINC02817 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02817 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02817 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02817 Gene

Proteins for LINC02817 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC02817 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02817 Gene

Domains & Families for LINC02817 Gene

Gene Families for LINC02817 Gene

HGNC:
genes like me logo Genes that share domains with LINC02817: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02817 Gene

Function for LINC02817 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for LINC02817 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02817 Gene

Localization for LINC02817 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02817 Gene

Pathways & Interactions for LINC02817 Gene

PathCards logo

SuperPathways for LINC02817 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02817 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02817 Gene

Drugs & Compounds for LINC02817 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC02817 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02817 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000051001B_9606 lncRNA 4342 2

Ensembl: ENST00000439004 (view in UCSC) ,

LNCipedia: lnc-DUSP10-5:1,

URS0000EEDE5B_9606 lncRNA 2266 1

Ensembl: ENST00000668399 (view in UCSC) ,

URS0000EF050E_9606 lncRNA 2041 1

Ensembl: ENST00000665847 (view in UCSC) ,

URS0000EF6672_9606 lncRNA 2016 1

Ensembl: ENST00000660516 (view in UCSC) ,

URS0000EF666F_9606 lncRNA 1536 1

Ensembl: ENST00000659256 (view in UCSC) ,

LINC02817 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02817 Gene

2 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02817

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02817 Gene

No ASD Table

Relevant External Links for LINC02817 Gene

GeneLoc Exon Structure for
LINC02817

Expression for LINC02817 Gene

Products:

  1. Primer products for research

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02817

SOURCE GeneReport for Unigene cluster for LINC02817 Gene:

Hs.722626
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02817 Gene

Orthologs for LINC02817 Gene

Evolution for LINC02817 Gene

ENSEMBL:
Gene Tree for LINC02817 (if available)
TreeFam:
Gene Tree for LINC02817 (if available)

No data available for Orthologs for LINC02817 Gene

Paralogs for LINC02817 Gene

No data available for Paralogs for LINC02817 Gene

Variants for LINC02817 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02817 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02817 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02817

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02817 Gene

Disorders for LINC02817 Gene

Additional Disease Information for LINC02817

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02817 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02817 Gene

Publications for LINC02817 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02817 Gene

Products for LINC02817 Gene

Sources for LINC02817 Gene