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Aliases for LINC02817 Gene

Subcategory (RNA class) for LINC02817 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02817 Gene

  • Long Intergenic Non-Protein Coding RNA 2817 2
  • Chromosome 1 Open Reading Frame 140 2
  • Uncharacterized LOC400804 3
  • Novel Transcript 5
  • AL445470.1 5
  • C1orf140 3

External Ids for LINC02817 Gene

Previous HGNC Symbols for LINC02817 Gene

  • C1orf140

Summaries for LINC02817 Gene

GeneCards Summary for LINC02817 Gene

LINC02817 (Long Intergenic Non-Protein Coding RNA 2817) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02817 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02817 Gene

Genomics for LINC02817 Gene

GeneHancer (GH) Regulatory Elements for LINC02817 Gene

Promoters and enhancers for LINC02817 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J221334 Promoter/Enhancer 1.3 Ensembl ENCODE 610.1 +0.6 619 2.4 SP7 SP1 SP5 MZF1 POLR2A ZSCAN4 ZEB2 ZNF776 TCF7L2 FOXA2 LINC02817 GC01P221336 GC01M221331 LOC105372932
GH01J221337 Enhancer 0.2 Ensembl 600.7 -1.4 -1405 0.2 GC01P221336 LINC02817 LOC105372932 PIR33032
GH01J221392 Enhancer 1.3 FANTOM5 Ensembl ENCODE 5.7 -57.5 -57525 3.2 MAFK SP7 KLF14 GLIS2 ZBTB8A ZSCAN4 ZEB2 ZNF639 ZNF629 ZNF692 LINC02817 PIR33032 GC01P221336
GH01J221315 Enhancer 0.5 ENCODE 9.8 +20.7 20722 0.2 PRDM10 CEBPB NFYB RFX5 JUND LINC02817 GC01M221331 LOC105372932
GH01J221309 Enhancer 0.5 FANTOM5 9.8 +27.1 27059 0.2 MZF1 ZNF680 PKNOX1 SCRT2 LINC02817 LOC105372932 GC01M221331
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02817 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02817 Gene

Genomic Locations for LINC02817 Gene
chr1:221,329,928-221,336,296
(GRCh38/hg38)
Size:
6,369 bases
Orientation:
Minus strand
chr1:221,503,270-221,509,638
(GRCh37/hg19)
Size:
6,369 bases
Orientation:
Minus strand

Genomic View for LINC02817 Gene

Genes around LINC02817 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02817 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02817 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02817 Gene

Proteins for LINC02817 Gene

Post-translational modifications for LINC02817 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02817 Gene

Domains & Families for LINC02817 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02817 Gene

Function for LINC02817 Gene

Phenotypes From GWAS Catalog for LINC02817 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02817 Gene

Localization for LINC02817 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02817 Gene

Pathways & Interactions for LINC02817 Gene

PathCards logo

SuperPathways for LINC02817 Gene

No Data Available

Interacting Proteins for LINC02817 Gene

Gene Ontology (GO) - Biological Process for LINC02817 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02817 Gene

Drugs & Compounds for LINC02817 Gene

No Compound Related Data Available

Transcripts for LINC02817 Gene

mRNA/cDNA for LINC02817 Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Unigene Clusters for LINC02817 Gene

Uncharacterized LOC400804:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02817 Gene

No ASD Table

Relevant External Links for LINC02817 Gene

GeneLoc Exon Structure for
LINC02817
ECgene alternative splicing isoforms for
LINC02817

Expression for LINC02817 Gene

SOURCE GeneReport for Unigene cluster for LINC02817 Gene:

Hs.722626
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02817 Gene

Orthologs for LINC02817 Gene

Evolution for LINC02817 Gene

ENSEMBL:
Gene Tree for LINC02817 (if available)
TreeFam:
Gene Tree for LINC02817 (if available)

No data available for Orthologs for LINC02817 Gene

Paralogs for LINC02817 Gene

No data available for Paralogs for LINC02817 Gene

Variants for LINC02817 Gene

Sequence variations from dbSNP and Humsavar for LINC02817 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000105786 -- 221,337,371(-) G/A upstream_transcript_variant
rs1001421743 -- 221,332,290(-) A/G non_coding_transcript_variant
rs1001584064 -- 221,338,084(-) G/A upstream_transcript_variant
rs1001608420 -- 221,335,779(-) G/A intron_variant
rs1001725743 -- 221,329,435(-) A/G downstream_transcript_variant

Additional Variant Information for LINC02817 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02817

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02817 Gene

Disorders for LINC02817 Gene

No disorders were found for LINC02817 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02817 Gene

Publications for LINC02817 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LINC02817 Gene

Products for LINC02817 Gene

Sources for LINC02817 Gene

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