LINC02817 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2817

GC01M221330
GIFtS:
10
See more...

Aliases for LINC02817 Gene

Subcategory (RNA class) for LINC02817 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02817 Gene

  • Long Intergenic Non-Protein Coding RNA 2817 2 3 5
  • LINC02817 2 5
  • Chromosome 1 Open Reading Frame 140 2
  • NONHSAG004365.2 91
  • Lnc-DUSP10-5 165
  • C1orf140 3
  • FLJ46636 2

External Ids for LINC02817 Gene

Previous HGNC Symbols for LINC02817 Gene

  • C1orf140

Summaries for LINC02817 Gene

GeneCards Summary for LINC02817 Gene

LINC02817 (Long Intergenic Non-Protein Coding RNA 2817) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02817 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02817 Gene

Genomics for LINC02817 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02817 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J221334 Enhancer 1 Ensembl ENCODE 610.1 +1.3 1288 3.6 ZNF776 ZSCAN4 POLR2A SP1 ZNF561 SCRT2 TCF7 TCF7L2 JUND ZXDB LINC02817 MARK1 piR-53518-001 LOC105372932 DUSP10 HLX
GH01J221392 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.7 -57.4 -57352 3.2 ZNF629 ZNF692 ZSCAN4 ZNF501 ZNF561 SCRT2 ZBTB44 ZNF639 JUND ZNF10 LINC02817 HSALNG0010797 piR-61289-006 LOC105372932 DUSP10 HLX
GH01J221315 Enhancer 0.6 Ensembl ENCODE 9.8 +21.0 20988 1.4 PRDM10 CEBPB NFYB RFX5 TBP JUND piR-53518-001 LINC02817 LOC105372932 DUSP10 HLX
GH01J221309 Enhancer 0.4 FANTOM5 9.8 +27.3 27252 0.2 SCRT2 MZF1 PKNOX1 ZNF680 LINC02817 LOC105372932 piR-53518-001 DUSP10 HLX
GH01J221283 Enhancer 1 Ensembl ENCODE 4.5 +52.7 52651 1.3 ZNF174 ZNF300 ZNF776 ZNF331 ZNF341 ZNF37A ZNF561 ZBTB44 ZNF248 TSHZ1 piR-39098-020 LINC02817 lnc-HLX-4 HLX DUSP10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02817 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02817 Gene

Genomic Locations for LINC02817 Gene
chr1:221,329,928-221,336,489
(GRCh38/hg38)
Size:
6,562 bases
Orientation:
Minus strand
chr1:221,503,270-221,509,638
(GRCh37/hg19)
Size:
6,369 bases
Orientation:
Minus strand

Genomic View for LINC02817 Gene

Genes around LINC02817 on UCSC Golden Path with GeneCards custom track
LINC02817 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02817 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02817 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02817 Gene

Proteins for LINC02817 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02817 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02817 Gene

Domains & Families for LINC02817 Gene

Gene Families for LINC02817 Gene

HGNC:
genes like me logo Genes that share domains with LINC02817: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02817 Gene

Function for LINC02817 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02817 Gene

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02817

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02817 Gene

Localization for LINC02817 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02817 Gene

Pathways & Interactions for LINC02817 Gene

PathCards logo

SuperPathways for LINC02817 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02817 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02817 Gene

Drugs & Compounds for LINC02817 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02817 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02817 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000051001B_9606 lncRNA 4340 3

HGNC: 32042,

Ensembl: ENST00000439004 (view in UCSC) ,

LNCipedia: lnc-DUSP10-5:1,

URS0000EEDE5B_9606 lncRNA 2266 1

Ensembl: ENST00000668399 (view in UCSC) ,

URS0000EF050E_9606 lncRNA 2041 1

Ensembl: ENST00000665847 (view in UCSC) ,

URS0000EF6672_9606 lncRNA 2016 1

Ensembl: ENST00000660516 (view in UCSC) ,

URS0000EF666F_9606 lncRNA 1536 1

Ensembl: ENST00000659256 (view in UCSC) ,

LINC02817 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02817 Gene

2 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02817

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02817 Gene

No ASD Table

Relevant External Links for LINC02817 Gene

GeneLoc Exon Structure for
LINC02817

Expression for LINC02817 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02817

SOURCE GeneReport for Unigene cluster for LINC02817 Gene:

Hs.722626
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02817 Gene

Orthologs for LINC02817 Gene

Evolution for LINC02817 Gene

ENSEMBL:
Gene Tree for LINC02817 (if available)
TreeFam:
Gene Tree for LINC02817 (if available)

No data available for Orthologs for LINC02817 Gene

Paralogs for LINC02817 Gene

No data available for Paralogs for LINC02817 Gene

Variants for LINC02817 Gene

Additional dbSNP identifiers (rs#s) for LINC02817 Gene

Additional Variant Information for LINC02817 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02817

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02817 Gene

Disorders for LINC02817 Gene

Additional Disease Information for LINC02817

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02817 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02817 Gene

Publications for LINC02817 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02817 Gene

Products for LINC02817 Gene

Sources for LINC02817 Gene