Aliases for LINC02817 Gene
Subcategory (RNA class) for LINC02817 Gene
non-coding RNA
Quality Score for this RNA gene is
13
Aliases for LINC02817 Gene
External Ids for LINC02817 Gene
- HGNC: 32042
- Entrez Gene: 400804
- Ensembl: ENSG00000234754
Previous HGNC Symbols for LINC02817 Gene
- C1orf140
Summaries for LINC02817 Gene
GeneCards Summary for LINC02817 Gene
LINC02817 (Long Intergenic Non-Protein Coding RNA 2817) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for LINC02817 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02817 Gene
Genomics for LINC02817 Gene
GeneHancer (GH) Regulatory Elements for LINC02817 Gene
Promoters and enhancers for LINC02817 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J221334 | Promoter/Enhancer | 1.3 | Ensembl ENCODE | 610.1 | +0.6 | 619 | 2.4 | SP7 SP1 SP5 MZF1 POLR2A ZSCAN4 ZEB2 ZNF776 TCF7L2 FOXA2 | LINC02817 GC01P221336 GC01M221331 LOC105372932 | |
| GH01J221337 | Enhancer | 0.2 | Ensembl | 600.7 | -1.4 | -1405 | 0.2 | GC01P221336 LINC02817 LOC105372932 PIR33032 | ||
| GH01J221392 | Enhancer | 1.3 | FANTOM5 Ensembl ENCODE | 5.7 | -57.5 | -57525 | 3.2 | MAFK SP7 KLF14 GLIS2 ZBTB8A ZSCAN4 ZEB2 ZNF639 ZNF629 ZNF692 | LINC02817 PIR33032 GC01P221336 | |
| GH01J221315 | Enhancer | 0.5 | ENCODE | 9.8 | +20.7 | 20722 | 0.2 | PRDM10 CEBPB NFYB RFX5 JUND | LINC02817 GC01M221331 LOC105372932 | |
| GH01J221309 | Enhancer | 0.5 | FANTOM5 | 9.8 | +27.1 | 27059 | 0.2 | MZF1 ZNF680 PKNOX1 SCRT2 | LINC02817 LOC105372932 GC01M221331 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02817 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LINC02817 Gene
Genomic Locations for LINC02817 Gene
- chr1:221,329,928-221,336,296
- (GRCh38/hg38)
- Size:
- 6,369 bases
- Orientation:
- Minus strand
- chr1:221,503,270-221,509,638
- (GRCh37/hg19)
- Size:
- 6,369 bases
- Orientation:
- Minus strand
Genomic View for LINC02817 Gene
Genes around LINC02817 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1q41 by HGNC
- 1q41 by Entrez Gene
- 1q41 by Ensembl
LINC02817 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02817 Gene
Proteins for LINC02817 Gene
Post-translational modifications for LINC02817 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02817
- Origene Custom Protein Services for LINC02817
No data available for DME Specific Peptides for LINC02817 Gene
Domains & Families for LINC02817 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02817 Gene
Function for LINC02817 Gene
Phenotypes From GWAS Catalog for LINC02817 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC02817
-
CRISPR Products
- Browse CRISPR knockouts for LINC02817
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC02817
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for LINC02817
- Browse OriGene Inhibitory RNA Products For LINC02817
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02817
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC02817
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02817 Gene
Localization for LINC02817 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02817 Gene
Transcripts for LINC02817 Gene
mRNA/cDNA for LINC02817 Gene
- (2) Additional mRNA sequences :
- (2) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000439004 4340 bps (ENST00000439004.1)
- ENST00000434398 645 bps (ENST00000434398.1)
- (3) RNA Central transcripts :
Unigene Clusters for LINC02817 Gene
CRISPR Products
- Browse CRISPR knockouts for LINC02817
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC02817
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for LINC02817
- Browse OriGene Inhibitory RNA Products For LINC02817
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02817
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC02817
Expression for LINC02817 Gene
SOURCE GeneReport for Unigene cluster for LINC02817 Gene:
Hs.722626
No Expression Related Data Available
Primer Products
-
OriGene qPCR primer pairs for LINC02817
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02817 Gene
Orthologs for LINC02817 Gene
No data available for Orthologs for LINC02817 Gene
Paralogs for LINC02817 Gene
No data available for Paralogs for LINC02817 Gene
Variants for LINC02817 Gene
| SNP ID | Clin | Chr 01 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000105786 | -- | 221,337,371(-) | G/A | upstream_transcript_variant | |
| rs1001421743 | -- | 221,332,290(-) | A/G | non_coding_transcript_variant | |
| rs1001584064 | -- | 221,338,084(-) | G/A | upstream_transcript_variant | |
| rs1001608420 | -- | 221,335,779(-) | G/A | intron_variant | |
| rs1001725743 | -- | 221,329,435(-) | A/G | downstream_transcript_variant |
Additional Variant Information for LINC02817 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02817
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02817 Gene
Disorders for LINC02817 Gene
No disorders were found for LINC02817 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02817 Gene
Publications for LINC02817 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
No data available for External Links for LINC02817 Gene
Products for LINC02817 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02817
- Origene Custom Protein Services for LINC02817
- Origene shrna and RNAi products in human, mouse, rat for LINC02817
- Browse OriGene Inhibitory RNA Products For LINC02817
- OriGene qPCR primer pairs for LINC02817
- Browse CRISPR knockouts for LINC02817
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02817
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC02817
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC02817
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC02817
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02817
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC02817
Sources for LINC02817 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind