Aliases for LINC02816 Gene

Data sources for LINC02816 Gene:

Subcategory (RNA class) for LINC02816 Gene

lncRNA

Aliases for LINC02816 Gene

External Ids for LINC02816 Gene

Summaries for LINC02816 Gene

GeneCards Summary for LINC02816 Gene

LINC02816 (Long Intergenic Non-Protein Coding RNA 2816) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02816 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02816 Gene

Genomics for LINC02816 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02816 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J180883 Enhancer 1 Ensembl ENCODE 12.3 -24.2 -24190 0.3 CEBPA DEK CTCF ZEB1 ELF1 CEBPB REST ZNF639 TRIM22 ZNF341 lnc-KIAA1614-4 LINC02816 KIAA1614 ENSG00000243155 IER5 MR1 lnc-KIAA1614-3 XPR1
GH01J180515 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 9.7 -390.2 -390228 1.9 CEBPA DEK ZNF217 CTCF ELF1 CEBPB REST GTF2E2 ZNF511 VEZF1 XPR1 ENSG00000243155 KIAA1614 LINC02816 ACBD6 KY994054-002 OVAAL
GH01J181166 Enhancer 1 Ensembl ENCODE 10.5 +259.9 259866 1.5 ZNF217 CTCF ZIC2 REST NFATC3 TRIM22 SMC3 RAD21 RFX5 YY1 IER5 MR1 KIAA1614 LINC02816 ENSG00000243155 HSALNG0008859 LINC01732 CACNA1E
GH01J180881 Enhancer 0.8 ENCODE 12.3 -24.4 -24423 0.2 CEBPA DEK CTCF ZEB1 ELF1 CEBPB REST ZNF639 TRIM22 ZNF341 lnc-KIAA1614-4 LINC02816 KIAA1614 ENSG00000243155 IER5 MR1 lnc-KIAA1614-3 XPR1
GH01J180981 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.7 +75.7 75685 1.5 ZIC2 EBF1 SMC3 SPI1 POLR2A ELF1 IKZF1 NR2F1 IKZF2 RUNX3 KIAA1614 LINC02816 lnc-KIAA1614-6 lnc-ACBD6-7 STX6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02816 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02816 Gene

Latest Assembly
chr1:180,906,463-180,910,501
(GRCh38/hg38)
Size:
4,039 bases
Orientation:
Plus strand

Previous Assembly
chr1:180,875,787-180,878,302
(GRCh37/hg19 by Ensembl)
Size:
2,516 bases
Orientation:
Plus strand

Genomic View for LINC02816 Gene

Genes around LINC02816 on UCSC Golden Path with GeneCards custom track
LINC02816 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02816 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02816 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02816 Gene

Proteins for LINC02816 Gene

Post-translational modifications for LINC02816 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02816 Gene

Domains & Families for LINC02816 Gene

Gene Families for LINC02816 Gene

genes like me logo Genes that share domains with LINC02816: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02816 Gene

Function for LINC02816 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02816 Gene

Localization for LINC02816 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02816 Gene

Pathways & Interactions for LINC02816 Gene

PathCards logo

SuperPathways for LINC02816 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02816 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02816 Gene

Drugs & Compounds for LINC02816 Gene

No Compound Related Data Available

Transcripts for LINC02816 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02816 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000148947_9606 lncRNA 543 4

Ensembl: ENST00000434447 (view in UCSC) ,

LncBook: HSALNT0018280,

LNCipedia: lnc-KIAA1614-1:1,

NONCODE: NONHSAT008268.2,

URS00005443B7_9606 lncRNA 448 4

Ensembl: ENST00000422858 (view in UCSC) ,

LncBook: HSALNT0018283,

LNCipedia: lnc-KIAA1614-1:2,

NONCODE: NONHSAT008269.2,

URS00008B37BA_9606 lncRNA 1481 2

LNCipedia: lnc-KIAA1614-1:3,

NONCODE: NONHSAT008270.2,

URS00009B94E1_9606 lncRNA 748 2

LncBook: HSALNT0018281,

NONCODE: NONHSAT150125.1,

URS0001BEF25A_9606 lncRNA 1480 1

LncBook: HSALNT0018284,

LINC02816 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02816 Gene

No ASD Table

Relevant External Links for LINC02816 Gene

GeneLoc Exon Structure for
LINC02816

No data available for mRNA/cDNA for LINC02816 Gene

Expression for LINC02816 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02816 Gene

Orthologs for LINC02816 Gene

Evolution for LINC02816 Gene

ENSEMBL:
Gene Tree for LINC02816 (if available)
TreeFam:
Gene Tree for LINC02816 (if available)

No data available for Orthologs for LINC02816 Gene

Paralogs for LINC02816 Gene

No data available for Paralogs for LINC02816 Gene

Variants for LINC02816 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02816 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02816 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02816

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02816 Gene

Disorders for LINC02816 Gene

Additional Disease Information for LINC02816

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02816 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02816 Gene

Publications for LINC02816 Gene

No publications were found for LINC02816 Gene.

No data available for Mastermind for LINC02816 Gene

Products for LINC02816 Gene

Sources for LINC02816 Gene