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Aliases for LINC02816 Gene

Subcategory (RNA class) for LINC02816 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02816 Gene

  • Long Intergenic Non-Protein Coding RNA 2816 2 3
  • Novel Transcript 5
  • AL162431.1 5

External Ids for LINC02816 Gene

Summaries for LINC02816 Gene

GeneCards Summary for LINC02816 Gene

LINC02816 (Long Intergenic Non-Protein Coding RNA 2816) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02816 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02816 Gene

Genomics for LINC02816 Gene

GeneHancer (GH) Regulatory Elements for LINC02816 Gene

Promoters and enhancers for LINC02816 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J180881 Enhancer 1.1 Ensembl ENCODE 12.3 -24.8 -24802 0.6 ZNF121 ZSCAN21 CTCF ZBTB7A SP7 RAD21 CREB1 PRDM10 CEBPA REST LINC02816 KIAA1614 ENSG00000243155 IER5 MR1 GC01M181206 XPR1
GH01J180515 Enhancer 1.1 Ensembl ENCODE 9.7 -390.8 -390805 1.7 CC2D1A ELF3 CTCF ZSCAN21 ZNF24 SP7 RAD21 SMARCA4 KAT8 ARID2 LHX4 XPR1 ENSG00000243155 KIAA1614 LINC02816 ACBD6 GC01M181068 ENSG00000206905
GH01J180981 Enhancer 1 Ensembl ENCODE dbSUPER 10.7 +75.1 75145 1.7 IKZF1 IKZF2 ZIC2 RUNX3 ELF1 NR2F1 EBF1 POLR2A KIAA1614 LINC02816 ENSG00000243155 STX6
GH01J180524 Enhancer 0.8 Ensembl 10.1 -380.6 -380602 3 CBFA2T2 ZNF148 TRIM24 PRDM1 EGR1 MTA1 DPF2 IKZF1 PKNOX1 ZNF24 ACBD6 XPR1 KIAA1614 LINC02816 ENSG00000243155 LHX4 GC01P180535 ENSG00000206905 GC01M181068
GH01J180987 Enhancer 0.6 dbSUPER 10.5 +81.6 81647 1.5 ZIC2 CEBPA SOX13 ESRRA NFIC PRDM4 BCL6 BHLHE40 ZNF660 NFIA KIAA1614 MR1 LINC02816 ACBD6 ENSG00000243155 STX6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02816 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02816 Gene

Genomic Locations for LINC02816 Gene
chr1:180,906,903-180,909,621
(GRCh38/hg38)
Size:
2,719 bases
Orientation:
Plus strand
chr1:180,875,787-180,878,302
(GRCh37/hg19)
Size:
2,516 bases
Orientation:
Plus strand

Genomic View for LINC02816 Gene

Genes around LINC02816 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02816 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02816 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02816 Gene

Proteins for LINC02816 Gene

Post-translational modifications for LINC02816 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02816 Gene

Domains & Families for LINC02816 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02816 Gene

Function for LINC02816 Gene

Phenotypes From GWAS Catalog for LINC02816 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02816 Gene

Localization for LINC02816 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02816 Gene

Pathways & Interactions for LINC02816 Gene

PathCards logo

SuperPathways for LINC02816 Gene

No Data Available

Interacting Proteins for LINC02816 Gene

Gene Ontology (GO) - Biological Process for LINC02816 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02816 Gene

Drugs & Compounds for LINC02816 Gene

No Compound Related Data Available

Transcripts for LINC02816 Gene

mRNA/cDNA for LINC02816 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02816 Gene

No ASD Table

Relevant External Links for LINC02816 Gene

GeneLoc Exon Structure for
LINC02816
ECgene alternative splicing isoforms for
LINC02816

Expression for LINC02816 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02816 Gene

Orthologs for LINC02816 Gene

Evolution for LINC02816 Gene

ENSEMBL:
Gene Tree for LINC02816 (if available)
TreeFam:
Gene Tree for LINC02816 (if available)

No data available for Orthologs for LINC02816 Gene

Paralogs for LINC02816 Gene

No data available for Paralogs for LINC02816 Gene

Variants for LINC02816 Gene

Sequence variations from dbSNP and Humsavar for LINC02816 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000037877 -- 180,907,156(+) G/T intron_variant
rs1001168489 -- 180,909,066(+) C/G/T non_coding_transcript_variant
rs1003534948 -- 180,909,143(+) T/G non_coding_transcript_variant
rs1003759082 -- 180,904,629(+) T/C upstream_transcript_variant
rs1004023153 -- 180,904,558(+) T/C upstream_transcript_variant

Variation tolerance for LINC02816 Gene

Gene Damage Index Score: 0.00; 0.02% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC02816 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02816

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC02816 Gene

Disorders for LINC02816 Gene

No disorders were found for LINC02816 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02816 Gene

Publications for LINC02816 Gene

No publications were found for LINC02816 Gene.

No data available for External Links for LINC02816 Gene

Products for LINC02816 Gene

Sources for LINC02816 Gene

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