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Aliases for LINC02813 Gene

Subcategory (RNA class) for LINC02813 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02813 Gene

  • Long Intergenic Non-Protein Coding RNA 2813 2 3
  • Novel Transcript 5
  • AL391811.1 5

External Ids for LINC02813 Gene

Summaries for LINC02813 Gene

GeneCards Summary for LINC02813 Gene

LINC02813 (Long Intergenic Non-Protein Coding RNA 2813) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02813 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02813 Gene

Genomics for LINC02813 Gene

GeneHancer (GH) Regulatory Elements for LINC02813 Gene

Promoters and enhancers for LINC02813 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J224766 Enhancer 0.2 Ensembl 606.3 +0.7 749 1.4 LINC02813 ENSG00000229400 GC01M224862
GH01J224765 Enhancer 0.2 Ensembl 600.7 -0.6 -551 0.4 LINC02813 ENSG00000229400
GH01J224746 Enhancer 0.9 Ensembl dbSUPER 6.9 -16.3 -16251 11.4 ZNF687 RELA ZNF174 ZNF548 MZF1 IKZF1 PKNOX1 PRDM10 IKZF2 ZIC2 CICP5 NVL ENSG00000185495 WDR26 ENSG00000233384 CNIH3 LINC02813 ENSG00000229400
GH01J224789 Enhancer 0.5 Ensembl 11.3 +25.4 25449 4 ZNF121 PRDM1 MYC MAX BCL6B LINC02813 ENSG00000229400 DNAH14 GC01M224862
GH01J224828 Enhancer 0.2 Ensembl 10.7 +61.8 61849 0.4 LINC02813 GC01M224862
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02813 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02813 Gene

Genomic Locations for LINC02813 Gene
chr1:224,766,352-224,773,341
(GRCh38/hg38)
Size:
6,990 bases
Orientation:
Plus strand
chr1:224,954,602-224,961,043
(GRCh37/hg19)
Size:
6,442 bases
Orientation:
Plus strand

Genomic View for LINC02813 Gene

Genes around LINC02813 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02813 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02813 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02813 Gene

Proteins for LINC02813 Gene

Post-translational modifications for LINC02813 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02813 Gene

Domains & Families for LINC02813 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02813 Gene

Function for LINC02813 Gene

Phenotypes From GWAS Catalog for LINC02813 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02813 Gene

Localization for LINC02813 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02813 Gene

Pathways & Interactions for LINC02813 Gene

PathCards logo

SuperPathways for LINC02813 Gene

No Data Available

Interacting Proteins for LINC02813 Gene

Gene Ontology (GO) - Biological Process for LINC02813 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02813 Gene

Drugs & Compounds for LINC02813 Gene

No Compound Related Data Available

Transcripts for LINC02813 Gene

mRNA/cDNA for LINC02813 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02813 Gene

No ASD Table

Relevant External Links for LINC02813 Gene

GeneLoc Exon Structure for
LINC02813
ECgene alternative splicing isoforms for
LINC02813

Expression for LINC02813 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02813 Gene

Orthologs for LINC02813 Gene

Evolution for LINC02813 Gene

ENSEMBL:
Gene Tree for LINC02813 (if available)
TreeFam:
Gene Tree for LINC02813 (if available)

No data available for Orthologs for LINC02813 Gene

Paralogs for LINC02813 Gene

No data available for Paralogs for LINC02813 Gene

Variants for LINC02813 Gene

Sequence variations from dbSNP and Humsavar for LINC02813 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000138738 -- 224,764,617(+) C/T upstream_transcript_variant
rs1000140879 -- 224,767,672(+) C/T intron_variant
rs1000195084 -- 224,767,401(+) C/T intron_variant
rs1000877098 -- 224,770,754(+) G/A intron_variant
rs1001119155 -- 224,769,007(+) C/T intron_variant

Additional Variant Information for LINC02813 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02813

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02813 Gene

Disorders for LINC02813 Gene

No disorders were found for LINC02813 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02813 Gene

Publications for LINC02813 Gene

No publications were found for LINC02813 Gene.

No data available for External Links for LINC02813 Gene

Products for LINC02813 Gene

Sources for LINC02813 Gene

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