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Aliases for LINC02804 Gene

Subcategory (RNA class) for LINC02804 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02804 Gene

  • Long Intergenic Non-Protein Coding RNA 2804 2 3
  • Novel Transcript 5
  • AC239803.3 5

External Ids for LINC02804 Gene

Summaries for LINC02804 Gene

GeneCards Summary for LINC02804 Gene

LINC02804 (Long Intergenic Non-Protein Coding RNA 2804) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02804 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02804 Gene

Genomics for LINC02804 Gene

GeneHancer (GH) Regulatory Elements for LINC02804 Gene

Promoters and enhancers for LINC02804 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J148011 Enhancer 0.2 Ensembl 600.7 +1.6 1570 0.2 TRR-CCT6-2 ENSG00000273059 LINC02804 PDZK1P1
GH01J148008 Enhancer 0.2 Ensembl 600.7 -1.4 -1430 0.2 PIR60446 LINC02804 PDZK1P1
GH01J148014 Promoter 0.5 Ensembl 0.7 +5.0 4970 0.2 RNU1-129P PDZK1P1 ENSG00000273059 LINC02804
GH01J148013 Promoter 0.5 Ensembl 0.7 +3.8 3770 0.2 ENSG00000273059 RNU1-129P PDZK1P1 LINC02804
GH01J148021 Enhancer 0.2 Ensembl 0.4 +13.8 13770 3.8 PIR43761 PIR36951 LINC02804
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02804 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02804 Gene

Genomic Locations for LINC02804 Gene
chr1:148,009,531-148,027,696
(GRCh38/hg38)
Size:
18,166 bases
Orientation:
Plus strand

Genomic View for LINC02804 Gene

Genes around LINC02804 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02804 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02804 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02804 Gene

Proteins for LINC02804 Gene

Post-translational modifications for LINC02804 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02804 Gene

Domains & Families for LINC02804 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02804 Gene

Function for LINC02804 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02804 Gene

Localization for LINC02804 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02804 Gene

Pathways & Interactions for LINC02804 Gene

PathCards logo

SuperPathways for LINC02804 Gene

No Data Available

Interacting Proteins for LINC02804 Gene

Gene Ontology (GO) - Biological Process for LINC02804 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02804 Gene

Drugs & Compounds for LINC02804 Gene

No Compound Related Data Available

Transcripts for LINC02804 Gene

mRNA/cDNA for LINC02804 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02804 Gene

No ASD Table

Relevant External Links for LINC02804 Gene

GeneLoc Exon Structure for
LINC02804
ECgene alternative splicing isoforms for
LINC02804

Expression for LINC02804 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02804 Gene

Orthologs for LINC02804 Gene

Evolution for LINC02804 Gene

ENSEMBL:
Gene Tree for LINC02804 (if available)
TreeFam:
Gene Tree for LINC02804 (if available)

No data available for Orthologs for LINC02804 Gene

Paralogs for LINC02804 Gene

No data available for Paralogs for LINC02804 Gene

Variants for LINC02804 Gene

Sequence variations from dbSNP and Humsavar for LINC02804 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001534692 -- 148,011,459(+) C/T genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1001609992 -- 148,011,614(+) A/G genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1002537748 -- 148,010,472(+) C/T genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1002611260 -- 148,010,816(+) G/A/T genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1005006946 -- 148,011,287(+) G/A genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant, upstream_transcript_variant

Additional Variant Information for LINC02804 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02804

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02804 Gene

Disorders for LINC02804 Gene

No disorders were found for LINC02804 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02804 Gene

Publications for LINC02804 Gene

No publications were found for LINC02804 Gene.

No data available for External Links for LINC02804 Gene

Products for LINC02804 Gene

Sources for LINC02804 Gene

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