Aliases for LINC02797 Gene

Data sources for LINC02797 Gene:

Subcategory (RNA class) for LINC02797 Gene

lncRNA

Aliases for LINC02797 Gene

External Ids for LINC02797 Gene

Summaries for LINC02797 Gene

GeneCards Summary for LINC02797 Gene

LINC02797 (Long Intergenic Non-Protein Coding RNA 2797) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02797 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02797 Gene

Genomics for LINC02797 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02797 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J072837 Enhancer 0.3 Ensembl 0.3 +45.1 45089 0.8 NFE2 EP300 piR-61240-007 LINC02797 ENSG00000225087 piR-45012-014 NEGR1
GH01J072845 Enhancer 0.3 Ensembl 0.2 +53.9 53897 2.4 POU5F1 NANOG LINC01360 piR-61240-007 ENSG00000225087 piR-45012-014 LINC02797 NEGR1
GH01J072830 Enhancer 0.2 Ensembl 0.3 +37.7 37697 0.8 piR-61240-007 LINC02797 ENSG00000225087 NEGR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02797 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02797 Gene

Latest Assembly
chr1:72,793,104-72,854,475
(GRCh38/hg38)
Size:
61,372 bases
Orientation:
Plus strand

Genomic View for LINC02797 Gene

Genes around LINC02797 on UCSC Golden Path with GeneCards custom track
LINC02797 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02797 Gene

Proteins for LINC02797 Gene

Post-translational modifications for LINC02797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02797 Gene

Domains & Families for LINC02797 Gene

Gene Families for LINC02797 Gene

genes like me logo Genes that share domains with LINC02797: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02797 Gene

Function for LINC02797 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02797 Gene

Localization for LINC02797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02797 Gene

Pathways & Interactions for LINC02797 Gene

PathCards logo

SuperPathways for LINC02797 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02797 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02797 Gene

Drugs & Compounds for LINC02797 Gene

No Compound Related Data Available

Transcripts for LINC02797 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02797 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000DBB6AB_9606 lncRNA 1065 1

Ensembl: ENST00000650621 (view in UCSC) ,

URS00008B6118_9606 lncRNA 410 3

LncBook: HSALNT0008921,

LNCipedia: lnc-FPGT-4:2,

NONCODE: NONHSAT003920.2,

URS00008BF33C_9606 lncRNA 406 3

LncBook: HSALNT0008922,

LNCipedia: lnc-FPGT-4:1,

NONCODE: NONHSAT003921.2,

URS00009C56AD_9606 lncRNA 1755 1

NONCODE: NONHSAT149187.1,

URS0001BE09F9_9606 lncRNA 408 1

LncBook: HSALNT0008921,

LINC02797 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02797 Gene

No ASD Table

Relevant External Links for LINC02797 Gene

GeneLoc Exon Structure for
LINC02797

No data available for mRNA/cDNA for LINC02797 Gene

Expression for LINC02797 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02797 Gene

Orthologs for LINC02797 Gene

Evolution for LINC02797 Gene

ENSEMBL:
Gene Tree for LINC02797 (if available)
TreeFam:
Gene Tree for LINC02797 (if available)

No data available for Orthologs for LINC02797 Gene

Paralogs for LINC02797 Gene

No data available for Paralogs for LINC02797 Gene

Variants for LINC02797 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02797 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02797 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02797

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02797 Gene

Disorders for LINC02797 Gene

No disorders were found for LINC02797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02797 Gene

Publications for LINC02797 Gene

No publications were found for LINC02797 Gene.

No data available for Mastermind for LINC02797 Gene

Products for LINC02797 Gene

Sources for LINC02797 Gene