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Aliases for LINC02796 Gene

Subcategory (RNA class) for LINC02796 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02796 Gene

  • Long Intergenic Non-Protein Coding RNA 2796 2 3
  • Novel Transcript 5
  • AL583808.2 5

External Ids for LINC02796 Gene

Summaries for LINC02796 Gene

GeneCards Summary for LINC02796 Gene

LINC02796 (Long Intergenic Non-Protein Coding RNA 2796) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02796 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02796 Gene

Genomics for LINC02796 Gene

GeneHancer (GH) Regulatory Elements for LINC02796 Gene

Promoters and enhancers for LINC02796 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J072725 Enhancer 0.3 ENCODE 0.3 -39.9 -39933 0.1 CTCF RNU6-1246P LINC02796 LOC105378798
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02796 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02796 Gene

Genomic Locations for LINC02796 Gene
chr1:72,765,016-72,794,882
(GRCh38/hg38)
Size:
29,867 bases
Orientation:
Plus strand
chr1:73,230,714-73,245,974
(GRCh37/hg19)
Size:
15,261 bases
Orientation:
Plus strand

Genomic View for LINC02796 Gene

Genes around LINC02796 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02796 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02796 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02796 Gene

Proteins for LINC02796 Gene

Post-translational modifications for LINC02796 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02796 Gene

Domains & Families for LINC02796 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02796 Gene

Function for LINC02796 Gene

Phenotypes From GWAS Catalog for LINC02796 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02796 Gene

Localization for LINC02796 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02796 Gene

Pathways & Interactions for LINC02796 Gene

PathCards logo

SuperPathways for LINC02796 Gene

No Data Available

Interacting Proteins for LINC02796 Gene

Gene Ontology (GO) - Biological Process for LINC02796 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02796 Gene

Drugs & Compounds for LINC02796 Gene

No Compound Related Data Available

Transcripts for LINC02796 Gene

mRNA/cDNA for LINC02796 Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LINC02796 Gene

Uncharacterized LOC339468:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02796 Gene

No ASD Table

Relevant External Links for LINC02796 Gene

GeneLoc Exon Structure for
LINC02796
ECgene alternative splicing isoforms for
LINC02796

Expression for LINC02796 Gene

SOURCE GeneReport for Unigene cluster for LINC02796 Gene:

Hs.434265
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02796 Gene

Orthologs for LINC02796 Gene

Evolution for LINC02796 Gene

ENSEMBL:
Gene Tree for LINC02796 (if available)
TreeFam:
Gene Tree for LINC02796 (if available)

No data available for Orthologs for LINC02796 Gene

Paralogs for LINC02796 Gene

No data available for Paralogs for LINC02796 Gene

Variants for LINC02796 Gene

Sequence variations from dbSNP and Humsavar for LINC02796 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000055041 -- 72,774,050(+) T/G intron_variant
rs1000174349 -- 72,779,468(+) T/C/G intron_variant
rs1000194616 -- 72,765,403(+) T/C intron_variant
rs1000447114 -- 72,768,020(+) A/T intron_variant
rs1000458604 -- 72,767,661(+) A/G intron_variant

Additional Variant Information for LINC02796 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02796

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02796 Gene

Disorders for LINC02796 Gene

No disorders were found for LINC02796 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02796 Gene

Publications for LINC02796 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LINC02796 Gene

Products for LINC02796 Gene

Sources for LINC02796 Gene

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