Aliases for LINC02793 Gene

Subcategory (RNA class) for LINC02793 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02793 Gene

  • Long Intergenic Non-Protein Coding RNA 2793 2 3 5
  • LINC02793 2 5
  • NONHSAG000717.2 91
  • HSALNG0001763 164
  • Lnc-CLIC4-2 165

External Ids for LINC02793 Gene

Summaries for LINC02793 Gene

GeneCards Summary for LINC02793 Gene

LINC02793 (Long Intergenic Non-Protein Coding RNA 2793) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02793 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02793 Gene

Genomics for LINC02793 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02793 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J025030 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.9 1910 5.1 SP1 IKZF1 POLR2A BACH1 LARP7 STAT3 RELA ZIC2 ZNF776 ZSCAN4 LINC02793 lnc-CLIC4-2 SRRM1 MAN1C1 RUNX3 SYF2 ENSG00000229162 ENSG00000261349 RSRP1
GH01J025028 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 600.7 -2.0 -1952 0.9 BACH1 LARP7 STAT3 SMAD5 IKZF2 TRIM22 PKNOX1 SCRT2 EED POLR2A LINC02793 RUNX3 ENSG00000229162 MAN1C1 RSRP1 SYF2 MIR4425
GH01J025027 Enhancer 1 FANTOM5 dbSUPER 0.7 -3.9 -3873 0.3 ZNF143 RELA IKZF2 EED DPF2 RELB RUNX3 GATAD2B BCLAF1 ZNF592 RSRP1 RUNX3 SYF2 LINC02793 MIR4425
GH01J025026 Enhancer 0.7 FANTOM5 dbSUPER 0.7 -4.3 -4277 0.2 ZNF592 NBN IKZF1 ZNF207 MAZ CTCF MYOM3 RSRP1 RUNX3 SYF2 LINC02793 MIR4425
GH01J025038 Enhancer 1 ENCODE dbSUPER 0.4 +6.3 6258 0.2 CTCF KDM1A JUND ZNF143 PKNOX1 REST RAD21 ZNF24 IKZF2 TRIM22 lnc-CLIC4-2 LINC02793 piR-61580-006 RUNX3 SYF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02793 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02793 Gene

Genomic Locations for LINC02793 Gene
chr1:25,031,087-25,052,786
(GRCh38/hg38)
Size:
21,700 bases
Orientation:
Plus strand

Genomic View for LINC02793 Gene

Genes around LINC02793 on UCSC Golden Path with GeneCards custom track
LINC02793 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02793 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02793 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02793 Gene

Proteins for LINC02793 Gene

Post-translational modifications for LINC02793 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02793 Gene

Domains & Families for LINC02793 Gene

Gene Families for LINC02793 Gene

genes like me logo Genes that share domains with LINC02793: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02793 Gene

Function for LINC02793 Gene

Phenotypes From GWAS Catalog for LINC02793 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02793 Gene

Localization for LINC02793 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02793 Gene

Pathways & Interactions for LINC02793 Gene

PathCards logo

SuperPathways for LINC02793 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02793 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02793 Gene

Drugs & Compounds for LINC02793 Gene

No Compound Related Data Available

Transcripts for LINC02793 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02793 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB7607_9606 lncRNA 1108 2

HGNC: 54317,

Ensembl: ENST00000648363 (view in UCSC) ,

URS0000DB86E8_9606 lncRNA 756 1

Ensembl: ENST00000648660 (view in UCSC) ,

URS00008BC3BB_9606 lncRNA 1015 3

LncBook: HSALNT0003400,

LNCipedia: lnc-CLIC4-2:1,

NONCODE: NONHSAT001683.2,

URS00008BF8C7_9606 lncRNA 592 3

LncBook: HSALNT0003398,

LNCipedia: lnc-CLIC4-2:2,

NONCODE: NONHSAT001682.2,

URS00009AFD54_9606 lncRNA 592 2

LncBook: HSALNT0003399,

NONCODE: NONHSAT148544.1,

LINC02793 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02793 Gene

No ASD Table

Relevant External Links for LINC02793 Gene

GeneLoc Exon Structure for
LINC02793

No data available for mRNA/cDNA for LINC02793 Gene

Expression for LINC02793 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02793 Gene

Orthologs for LINC02793 Gene

Evolution for LINC02793 Gene

ENSEMBL:
Gene Tree for LINC02793 (if available)
TreeFam:
Gene Tree for LINC02793 (if available)

No data available for Orthologs for LINC02793 Gene

Paralogs for LINC02793 Gene

No data available for Paralogs for LINC02793 Gene

Variants for LINC02793 Gene

Additional dbSNP identifiers (rs#s) for LINC02793 Gene

Additional Variant Information for LINC02793 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02793

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02793 Gene

Disorders for LINC02793 Gene

No disorders were found for LINC02793 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02793 Gene

Publications for LINC02793 Gene

No publications were found for LINC02793 Gene.

No data available for Mastermind for LINC02793 Gene

Products for LINC02793 Gene

Sources for LINC02793 Gene