Aliases for LINC02788 Gene

Subcategory (RNA class) for LINC02788 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LINC02788 Gene

  • Long Intergenic Non-Protein Coding RNA 2788 2 3

External Ids for LINC02788 Gene

Previous GeneCards Identifiers for LINC02788 Gene

  • GC01P090845

Summaries for LINC02788 Gene

GeneCards Summary for LINC02788 Gene

LINC02788 (Long Intergenic Non-Protein Coding RNA 2788) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LINC02788 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02788 Gene

Genomics for LINC02788 Gene

GeneHancer (GH) Regulatory Elements for LINC02788 Gene

Promoters and enhancers for LINC02788 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J090850 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 0.4 +6.9 6945 2.2 CTCF NR2F6 HLF L3MBTL2 POLR2A ZNF148 CSDE1 ZFX SP7 SP5 LINC02609 LINC02788 LINC01763
GH01J090840 Enhancer 1 VISTA UCNEbase 0.6 -3.5 -3524 1.7 PKNOX1 RFX1 POLR2A ZBTB20 ZBTB33 LINC02788 ENSG00000285532 LINC01763 LINC02609
GH01J090836 Promoter 0.6 Ensembl 0.4 -8.5 -8455 0.6 EZH2 USF1 ZBTB33 ENSG00000285532 LINC01763 LINC02788 LINC02609
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02788 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02788 Gene

Genomic Locations for LINC02788 Gene
chr1:90,844,356-90,851,026
(GRCh38/hg38)
Size:
6,671 bases
Orientation:
Plus strand

Genomic View for LINC02788 Gene

Genes around LINC02788 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02788 Gene

Proteins for LINC02788 Gene

Post-translational modifications for LINC02788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02788 Gene

Domains & Families for LINC02788 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02788 Gene

Function for LINC02788 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02788 Gene

Localization for LINC02788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02788 Gene

Pathways & Interactions for LINC02788 Gene

PathCards logo

SuperPathways for LINC02788 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02788 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02788 Gene

Drugs & Compounds for LINC02788 Gene

No Compound Related Data Available

Transcripts for LINC02788 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02788 Gene

No ASD Table

Relevant External Links for LINC02788 Gene

GeneLoc Exon Structure for
LINC02788
ECgene alternative splicing isoforms for
LINC02788

No data available for mRNA/cDNA for LINC02788 Gene

Expression for LINC02788 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02788 Gene

Orthologs for LINC02788 Gene

No data available for Orthologs and Evolution for LINC02788 Gene

Paralogs for LINC02788 Gene

No data available for Paralogs for LINC02788 Gene

Variants for LINC02788 Gene

Sequence variations from dbSNP and Humsavar for LINC02788 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000103798 -- 90,844,872(+) C/T non_coding_transcript_variant
rs1001022299 -- 90,846,837(+) G/A intron_variant
rs1001518738 -- 90,843,198(+) C/T upstream_transcript_variant
rs1002173660 -- 90,849,323(+) T/C non_coding_transcript_variant
rs1002456595 -- 90,849,707(+) G/T non_coding_transcript_variant

Additional Variant Information for LINC02788 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02788

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02788 Gene

Disorders for LINC02788 Gene

No disorders were found for LINC02788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02788 Gene

Publications for LINC02788 Gene

No publications were found for LINC02788 Gene.

No data available for External Links for LINC02788 Gene

Products for LINC02788 Gene

Sources for LINC02788 Gene