Aliases for LINC02787 Gene

Subcategory (RNA class) for LINC02787 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LINC02787 Gene

  • Long Intergenic Non-Protein Coding RNA 2787 2 3

External Ids for LINC02787 Gene

Summaries for LINC02787 Gene

GeneCards Summary for LINC02787 Gene

LINC02787 (Long Intergenic Non-Protein Coding RNA 2787) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LINC02787 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02787 Gene

Genomics for LINC02787 Gene

GeneHancer (GH) Regulatory Elements for LINC02787 Gene

Promoters and enhancers for LINC02787 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J090557 Enhancer 0.7 Ensembl 0.4 -10.5 -10517 1.5 LCORL NFIB BCL6B ZSCAN21 IKZF1 PKNOX1 ZNF544 IKZF2 PATZ1 ZNF629 ZNF326 HFM1 ZNF644 LINC02609 LINC02787 lnc-BARHL2-4
GH01J090538 Enhancer 0.6 UCNEbase Ensembl 0.4 +9.7 9729 0.8 EZH2 ENSG00000229201 LINC02787
GH01J090562 Enhancer 0.6 Ensembl ENCODE 0.4 -14.3 -14318 0.7 POU5F1 SP1 ATF7 ATF2 NANOG LINC02787 lnc-BARHL2-4
GH01J090508 Enhancer 0.9 Ensembl ENCODE 0.3 +38.2 38240 1.8 ZNF24 SP1 MLLT1 ZNF687 IKZF1 RXRA BACH1 TRIM22 IKZF2 PKNOX1 piR-38351-018 piR-54032 LINC02787
GH01J090533 Enhancer 0.6 Ensembl 0.4 +13.0 13030 1.4 ZNF24 MLLT1 ZNF687 IKZF1 BACH1 IKZF2 EZH2 BCL11A NR2F1 BATF ENSG00000229201 LINC02787
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02787 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02787 Gene

Genomic Locations for LINC02787 Gene
chr1:90,504,685-90,547,930
(GRCh38/hg38)
Size:
43,246 bases
Orientation:
Minus strand

Genomic View for LINC02787 Gene

Genes around LINC02787 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02787 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02787 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02787 Gene

Proteins for LINC02787 Gene

Post-translational modifications for LINC02787 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02787 Gene

Domains & Families for LINC02787 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02787 Gene

Function for LINC02787 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02787 Gene

Localization for LINC02787 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02787 Gene

Pathways & Interactions for LINC02787 Gene

PathCards logo

SuperPathways for LINC02787 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02787 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02787 Gene

Drugs & Compounds for LINC02787 Gene

No Compound Related Data Available

Transcripts for LINC02787 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02787 Gene

No ASD Table

Relevant External Links for LINC02787 Gene

GeneLoc Exon Structure for
LINC02787
ECgene alternative splicing isoforms for
LINC02787

No data available for mRNA/cDNA for LINC02787 Gene

Expression for LINC02787 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02787 Gene

Orthologs for LINC02787 Gene

No data available for Orthologs and Evolution for LINC02787 Gene

Paralogs for LINC02787 Gene

No data available for Paralogs for LINC02787 Gene

Variants for LINC02787 Gene

Sequence variations from dbSNP and Humsavar for LINC02787 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000249473 -- 90,519,337(-) AAAA/AAA intron_variant
rs1000382903 -- 90,547,373(-) G/C intron_variant
rs1000414064 -- 90,547,793(-) G/A non_coding_transcript_variant
rs1000492662 -- 90,534,446(-) C/A/T intron_variant
rs1000506789 -- 90,521,531(-) C/A intron_variant

Additional Variant Information for LINC02787 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02787

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02787 Gene

Disorders for LINC02787 Gene

No disorders were found for LINC02787 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02787 Gene

Publications for LINC02787 Gene

No publications were found for LINC02787 Gene.

No data available for External Links for LINC02787 Gene

Products for LINC02787 Gene

Sources for LINC02787 Gene