LINC02785 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2785

GC01P108040
GIFtS:
8
See more...

Aliases for LINC02785 Gene

Data sources for LINC02785 Gene:

Subcategory (RNA class) for LINC02785 Gene

lncRNA

Aliases for LINC02785 Gene

External Ids for LINC02785 Gene

Previous GeneCards Identifiers for LINC02785 Gene

  • GC01U906069

Summaries for LINC02785 Gene

GeneCards Summary for LINC02785 Gene

LINC02785 (Long Intergenic Non-Protein Coding RNA 2785) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02785 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02785 Gene

Genomics for LINC02785 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02785 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J108041 Enhancer 1 FANTOM5 ENCODE dbSUPER 270.5 +1.6 1557 1 FEZF1 MEIS2 IKZF1 TRIM28 ZXDB ATF7 RAD51 ZNF512 MTA2 PKNOX1 LINC02785 VAV3 VAV3-AS1 MN296832 SLC25A24
GH01J108038 Promoter/Enhancer 0.8 FANTOM5 Ensembl dbSUPER 250.7 -1.3 -1325 0.5 LINC02785 piR-61614-009 VAV3 SLC25A24
GH01J108071 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 21.9 +37.0 37039 13.4 TBP IKZF1 ETS1 ZNF395 HCFC1 VEZF1 TRIM22 ELF1 ZEB2 TAL1 LINC02785 VAV3 VAV3-AS1 FAM102B SLC25A24 PRPF38B MN296833 HSALNG0005795
GH01J108052 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 20 +11.4 11409 4.5 FEZF1 IKZF1 SIX4 CTCF FOXA2 RAD21 SPI1 SOX5 HNF4A TBX3 MN296832 MN296833 LINC02785 VAV3 VAV3-AS1 CLCC1 SLC25A24
GH01J108063 Enhancer 1 FANTOM5 Ensembl dbSUPER 18.5 +23.5 23539 1.6 CUX1 ZNF146 ATF2 GABPB1 IKZF1 SPI1 IKZF2 ATF7 EED MNT LINC02785 VAV3 VAV3-AS1 FAM102B MN296833 HSALNG0005795 SLC25A24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02785 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02785 Gene

Latest Assembly
chr1:108,040,262-108,076,196
(GRCh38/hg38)
Size:
35,935 bases
Orientation:
Plus strand

Previous Assembly
chr1:108,614,104-108,617,141
(GRCh37/hg19 by Ensembl)
Size:
3,038 bases
Orientation:
Plus strand

Genomic View for LINC02785 Gene

Genes around LINC02785 on UCSC Golden Path with GeneCards custom track
LINC02785 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02785 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02785 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02785 Gene

Proteins for LINC02785 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC02785 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02785 Gene

Domains & Families for LINC02785 Gene

Gene Families for LINC02785 Gene

HGNC:
genes like me logo Genes that share domains with LINC02785: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02785 Gene

Function for LINC02785 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02785 Gene

Localization for LINC02785 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02785 Gene

Pathways & Interactions for LINC02785 Gene

PathCards logo

SuperPathways for LINC02785 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02785 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02785 Gene

Drugs & Compounds for LINC02785 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC02785 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02785 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001F422F_9606 lncRNA 428 4

Ensembl: ENST00000451023 (view in UCSC) ,

LncBook: HSALNT0012076,

LNCipedia: VAV3-AS1:19,

NONCODE: NONHSAT004975.2,

URS00009C5FA2_9606 lncRNA 834 3

Ensembl: ENST00000634935 (view in UCSC) ,

LncBook: HSALNT0012071,

LNCipedia: VAV3-AS1:17,

URS00009C6006_9606 lncRNA 734 3

Ensembl: ENST00000419428 (view in UCSC) ,

LncBook: HSALNT0012059,

LNCipedia: VAV3-AS1:10,

URS00009C60EF_9606 lncRNA 2439 2

Ensembl: ENST00000634635 (view in UCSC) ,

LNCipedia: VAV3-AS1:13,

URS0000EEFDCA_9606 lncRNA 1722 1

Ensembl: ENST00000635340 (view in UCSC) ,

LINC02785 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02785 Gene

No ASD Table

Relevant External Links for LINC02785 Gene

GeneLoc Exon Structure for
LINC02785

No data available for mRNA/cDNA for LINC02785 Gene

Expression for LINC02785 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02785 Gene

Orthologs for LINC02785 Gene

Evolution for LINC02785 Gene

ENSEMBL:
Gene Tree for LINC02785 (if available)
TreeFam:
Gene Tree for LINC02785 (if available)

No data available for Orthologs for LINC02785 Gene

Paralogs for LINC02785 Gene

No data available for Paralogs for LINC02785 Gene

Variants for LINC02785 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02785 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02785 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02785

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02785 Gene

Disorders for LINC02785 Gene

Additional Disease Information for LINC02785

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02785 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02785 Gene

Publications for LINC02785 Gene

No publications were found for LINC02785 Gene.

No data available for Mastermind for LINC02785 Gene

Products for LINC02785 Gene

Sources for LINC02785 Gene