LINC02785 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2785

GC01P108040
GIFtS:
8
See more...

Aliases for LINC02785 Gene

Subcategory (RNA class) for LINC02785 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02785 Gene

  • Long Intergenic Non-Protein Coding RNA 2785 2 3 5
  • LINC02785 2 5
  • NONHSAG002302.2 91
  • NONHSAG002301.2 91
  • HSALNG0005787 164
  • VAV3-AS1 165

External Ids for LINC02785 Gene

Additional External Ids for LINC02785 Gene

Previous GeneCards Identifiers for LINC02785 Gene

  • GC01U906069

Summaries for LINC02785 Gene

GeneCards Summary for LINC02785 Gene

LINC02785 (Long Intergenic Non-Protein Coding RNA 2785) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02785 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02785 Gene

Genomics for LINC02785 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02785 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J108041 Enhancer 1 FANTOM5 ENCODE dbSUPER 620.5 +1.6 1556 1 ZNF512 PKNOX1 ZXDB ZNF335 FEZF1 TRIM28 TBX21 ATF7 MEIS2 MTA2 LINC02785 VAV3 VAV3-AS1 MN296832 SLC25A24
GH01J108038 Promoter/Enhancer 0.8 FANTOM5 Ensembl dbSUPER 600.7 -1.3 -1326 0.5 LINC02785 piR-61614-009 VAV3 SLC25A24
GH01J108052 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 20 +11.4 11408 4.5 GATAD2A CTCF IKZF1 TCF7 TCF7L2 ESR1 EZH2 FOXA2 HHEX NR2F2 MN296832 MN296833 LINC02785 VAV3 VAV3-AS1 CLCC1 SLC25A24
GH01J108071 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 21.9 +37.0 37038 13.4 CEBPG ATF7 ZNF512 LEF1 IKZF1 JUND PRDM1 ZNF143 PHF21A PKNOX1 LINC02785 VAV3 VAV3-AS1 FAM102B SLC25A24 PRPF38B MN296833 lnc-SLC25A24-2
GH01J108063 Enhancer 1 FANTOM5 Ensembl dbSUPER 18.5 +23.4 23438 1.8 IKZF2 ATF7 MNT EED AFF1 CUX1 ZNF146 ATF2 IKZF1 GABPB1 LINC02785 VAV3 VAV3-AS1 FAM102B MN296833 lnc-SLC25A24-2 SLC25A24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02785 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02785 Gene

Genomic Locations for LINC02785 Gene
chr1:108,040,263-108,076,196
(GRCh38/hg38)
Size:
35,934 bases
Orientation:
Plus strand
chr1:108,614,104-108,617,141
(GRCh37/hg19)
Size:
3,038 bases
Orientation:
Plus strand

Genomic View for LINC02785 Gene

Genes around LINC02785 on UCSC Golden Path with GeneCards custom track
LINC02785 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02785 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02785 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02785 Gene

Proteins for LINC02785 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02785 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02785 Gene

Domains & Families for LINC02785 Gene

Gene Families for LINC02785 Gene

HGNC:
genes like me logo Genes that share domains with LINC02785: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02785 Gene

Function for LINC02785 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02785 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02785 Gene

Localization for LINC02785 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02785 Gene

Pathways & Interactions for LINC02785 Gene

PathCards logo

SuperPathways for LINC02785 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02785 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02785 Gene

Drugs & Compounds for LINC02785 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02785 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02785 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001F422F_9606 lncRNA 428 4

Ensembl: ENST00000451023 (view in UCSC) , ENST00000638586 (view in UCSC) ,

LncBook: HSALNT0012076,

LNCipedia: VAV3-AS1:19,

NONCODE: NONHSAT004975.2,

URS00009C60EF_9606 lncRNA 2439 3

HGNC: 54305,

Ensembl: ENST00000634635 (view in UCSC) , ENST00000640493 (view in UCSC) ,

LNCipedia: VAV3-AS1:13,

URS00009C5FA2_9606 lncRNA 834 3

Ensembl: ENST00000634935 (view in UCSC) , ENST00000640155 (view in UCSC) ,

LncBook: HSALNT0012071,

LNCipedia: VAV3-AS1:17,

URS00009C6006_9606 lncRNA 734 3

Ensembl: ENST00000419428 (view in UCSC) , ENST00000638593 (view in UCSC) ,

LncBook: HSALNT0012059,

LNCipedia: VAV3-AS1:10,

URS0000EEFDCA_9606 lncRNA 1722 1

Ensembl: ENST00000635340 (view in UCSC) , ENST00000639685 (view in UCSC) ,

LINC02785 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02785 Gene

No ASD Table

Relevant External Links for LINC02785 Gene

GeneLoc Exon Structure for
LINC02785

No data available for mRNA/cDNA for LINC02785 Gene

Expression for LINC02785 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02785 Gene

Orthologs for LINC02785 Gene

Evolution for LINC02785 Gene

ENSEMBL:
Gene Tree for LINC02785 (if available)
TreeFam:
Gene Tree for LINC02785 (if available)

No data available for Orthologs for LINC02785 Gene

Paralogs for LINC02785 Gene

No data available for Paralogs for LINC02785 Gene

Variants for LINC02785 Gene

Additional dbSNP identifiers (rs#s) for LINC02785 Gene

Additional Variant Information for LINC02785 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02785

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02785 Gene

Disorders for LINC02785 Gene

Additional Disease Information for LINC02785

Open Targets Platform

No disorders were found for LINC02785 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02785 Gene

Publications for LINC02785 Gene

No publications were found for LINC02785 Gene.

No data available for Mastermind for LINC02785 Gene

Products for LINC02785 Gene

Sources for LINC02785 Gene