Aliases for LINC02784 Gene

Data sources for LINC02784 Gene:

RNA type for LINC02784 Gene

lncRNA

Aliases for LINC02784 Gene

External Ids for LINC02784 Gene

Summaries for LINC02784 Gene

GeneCards Summary for LINC02784 Gene

LINC02784 (Long Intergenic Non-Protein Coding RNA 2784) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02784 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02784 Gene

Genomics for LINC02784 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02784 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J054545 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 6.4 -19.0 -18997 4.1 NFIC ZIC2 CTCF SPI1 MAX POLR2A RAD51 SCRT1 ZNF48 RAD21 ACOT11 LINC02784 MROH7 piR-49732-021 FAM151A
GH01J054499 Promoter/Enhancer 1 ENCODE CraniofacialAtlas 4.9 +29.5 29466 0.9 MYC ZNF600 ZIC2 REST CTCF GABPB1 RAD21 ZBTB48 ETV1 SCRT1 LINC02784 HSALNG0003762 HSALNG0003761 ACOT11 SSBP3
GH01J054502 Enhancer 0.6 Ensembl 7.5 +26.5 26549 1.4 ZNF318 ETV1 TAF7 HDAC8 KLF1 L3MBTL2 ZFP36 NR2C1 ATF1 NFRKB HSALNG0003762 LINC02784 HSALNG0003761 ACOT11 SSBP3
GH01J054537 Enhancer 0.4 Ensembl 8.2 -8.7 -8651 0.6 ETV4 SOX5 ELF3 HNRNPA1P63 LINC02784 ACOT11 SSBP3
GH01J054520 Enhancer 0.5 Ensembl 0.4 +9.0 8950 0.2 CTCF RAD21 SMC3 ZNF143 PRDM1 HSALNG0003766 lnc-ACOT11-4 ENSG00000237173 TALDO1P1 LINC02784 ACOT11 SSBP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02784 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02784 Gene

Latest Assembly
chr1:54,506,289-54,529,050
(GRCh38/hg38)
Size:
22,762 bases
Orientation:
Minus strand

Previous Assembly
chr1:54,982,085-54,982,932
(GRCh37/hg19 by Ensembl)
Size:
848 bases
Orientation:
Minus strand

Genomic View for LINC02784 Gene

Genes around LINC02784 on UCSC Golden Path with GeneCards custom track
LINC02784 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02784 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02784 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02784 Gene

Proteins for LINC02784 Gene

Post-translational modifications for LINC02784 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02784 Gene

Domains & Families for LINC02784 Gene

Gene Families for LINC02784 Gene

genes like me logo Genes that share domains with LINC02784: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02784 Gene

Function for LINC02784 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02784 Gene

Localization for LINC02784 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02784 Gene

Pathways & Interactions for LINC02784 Gene

PathCards logo

SuperPathways for LINC02784 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02784 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02784 Gene

Drugs & Compounds for LINC02784 Gene

No Compound Related Data Available

Transcripts for LINC02784 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02784 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000382349_9606 lncRNA 683 4

Ensembl: ENST00000433377 (view in UCSC) ,

LncBook: HSALNT0007037,

LNCipedia: lnc-FAM151A-2:1,

NONCODE: NONHSAT003378.2,

URS0001BF54CD_9606 lncRNA 1912 1

LncBook: HSALNT0007035,

URS0001BEC9B7_9606 lncRNA 1782 1

LncBook: HSALNT0007036,

URS0001BCAA6F_9606 lncRNA 1660 1

LncBook: HSALNT0007033,

URS0001BF0ECE_9606 lncRNA 683 1

LncBook: HSALNT0007037,

LINC02784 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02784 Gene

No ASD Table

Relevant External Links for LINC02784 Gene

GeneLoc Exon Structure for
LINC02784

No data available for mRNA/cDNA for LINC02784 Gene

Expression for LINC02784 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02784 Gene

Orthologs for LINC02784 Gene

Evolution for LINC02784 Gene

ENSEMBL:
Gene Tree for LINC02784 (if available)
TreeFam:
Gene Tree for LINC02784 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02784

No data available for Orthologs for LINC02784 Gene

Paralogs for LINC02784 Gene

No data available for Paralogs for LINC02784 Gene

Variants for LINC02784 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02784 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02784 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02784
Leiden Open Variation Database (LOVD)
LINC02784

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02784 Gene

Disorders for LINC02784 Gene

Additional Disease Information for LINC02784

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02784 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02784 Gene

Publications for LINC02784 Gene

No publications were found for LINC02784 Gene.

No data available for Mastermind for LINC02784 Gene

Products for LINC02784 Gene

Sources for LINC02784 Gene