Aliases for LINC02783 Gene

Subcategory (RNA class) for LINC02783 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02783 Gene

  • Long Intergenic Non-Protein Coding RNA 2783 2 3 5
  • LINC02783 2 5
  • NONHSAG000510.2 91
  • HSALNG0001259 164
  • Lnc-PADI1-1 165

External Ids for LINC02783 Gene

Additional External Ids for LINC02783 Gene

Summaries for LINC02783 Gene

GeneCards Summary for LINC02783 Gene

LINC02783 (Long Intergenic Non-Protein Coding RNA 2783) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02783 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02783 Gene

Genomics for LINC02783 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02783 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J017188 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 611.3 +1.9 1893 5.8 ATF7 ZNF512 RFX1 IKZF1 JUND PRDM1 MTA2 ZIC2 PKNOX1 MTA1 LINC02783 NECAP2 CROCC PADI3 ATP13A2 PADI1 ENSG00000282843 PADI2
GH01J017182 Enhancer 0.7 Ensembl ENCODE dbSUPER 10.8 -4.3 -4282 3.8 ZIC2 REST PADI2 LINC02783 PADI4 RF00017-083 PADI1
GH01J017176 Enhancer 0.7 Ensembl dbSUPER 9.1 -12.7 -12683 1.8 ATF7 NFE2 CREB1 SPI1 ATF2 JUND ZNF558 ATF1 PADI1 PADI3 PADI4 LINC02783 RF00017-083 PADI2
GH01J017108 Enhancer 0.8 Ensembl ENCODE dbSUPER 7.2 -80.1 -80141 2.9 ZBTB20 ZNF189 ZNF664 ZNF133 ZNF362 ZBTB8A SDHB LINC02783 HSALNG0001255 PADI2
GH01J017196 Enhancer 0.7 Ensembl dbSUPER 7.9 +9.3 9318 1.4 PRDM10 ZNF692 ZIC2 ZNF600 ZNF341 ZBTB48 GLIS1 SP7 LINC02783 ENSG00000282843 PADI1 PADI2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02783 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02783 Gene

Genomic Locations for LINC02783 Gene
chr1:17,189,783-17,198,584
(GRCh38/hg38)
Size:
8,802 bases
Orientation:
Plus strand
chr1:17,516,278-17,524,112
(GRCh37/hg19)
Size:
7,835 bases
Orientation:
Plus strand

Genomic View for LINC02783 Gene

Genes around LINC02783 on UCSC Golden Path with GeneCards custom track
LINC02783 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02783 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02783 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02783 Gene

Proteins for LINC02783 Gene

Post-translational modifications for LINC02783 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02783 Gene

Domains & Families for LINC02783 Gene

Gene Families for LINC02783 Gene

genes like me logo Genes that share domains with LINC02783: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02783 Gene

Function for LINC02783 Gene

Phenotypes From GWAS Catalog for LINC02783 Gene

genes like me logo Genes that share phenotypes with LINC02783: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02783 Gene

Localization for LINC02783 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02783 Gene

Pathways & Interactions for LINC02783 Gene

PathCards logo

SuperPathways for LINC02783 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02783 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02783 Gene

Drugs & Compounds for LINC02783 Gene

No Compound Related Data Available

Transcripts for LINC02783 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02783 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009C6115_9606 lncRNA 590 4

HGNC: 54303,

RefSeq: NR_148993,

Ensembl: ENST00000634972 (view in UCSC) , ENST00000635604 (view in UCSC) ,

LNCipedia: lnc-PADI1-1:3,

URS00003001D0_9606 lncRNA 4676 3

Ensembl: ENST00000412427 (view in UCSC) , ENST00000625660 (view in UCSC) ,

LNCipedia: lnc-PADI1-1:1, lnc-PADI1-1:4,

NONCODE: NONHSAT001236.2,

URS00008BD0CF_9606 lncRNA 4600 2

LNCipedia: lnc-PADI1-1:2,

NONCODE: NONHSAT001237.2,

URS0000D5DE55_9606 lncRNA 2038 2

LncBook: HSALNT0002387,

LNCipedia: lnc-PADI1-1:10,

URS0000D5C1EE_9606 lncRNA 1180 2

LncBook: HSALNT0002380,

LNCipedia: lnc-PADI1-1:5,

LINC02783 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02783 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02783 Gene

No ASD Table

Relevant External Links for LINC02783 Gene

GeneLoc Exon Structure for
LINC02783

Expression for LINC02783 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02783

SOURCE GeneReport for Unigene cluster for LINC02783 Gene:

Hs.522935
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02783 Gene

Orthologs for LINC02783 Gene

Evolution for LINC02783 Gene

ENSEMBL:
Gene Tree for LINC02783 (if available)
TreeFam:
Gene Tree for LINC02783 (if available)

No data available for Orthologs for LINC02783 Gene

Paralogs for LINC02783 Gene

No data available for Paralogs for LINC02783 Gene

Variants for LINC02783 Gene

Additional dbSNP identifiers (rs#s) for LINC02783 Gene

Additional Variant Information for LINC02783 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02783

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02783 Gene

Disorders for LINC02783 Gene

Additional Disease Information for LINC02783

No disorders were found for LINC02783 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02783 Gene

Publications for LINC02783 Gene

  1. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3

No data available for Mastermind for LINC02783 Gene

Products for LINC02783 Gene

Sources for LINC02783 Gene