Aliases for LINC02783 Gene

Subcategory (RNA class) for LINC02783 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for LINC02783 Gene

  • Long Intergenic Non-Protein Coding RNA 2783 2 3
  • Novel Transcript 5
  • HSALNG0001259 169
  • NONHSAG000510 94
  • Lnc-PADI1-1 170
  • AL590644.1 5

External Ids for LINC02783 Gene

Additional External Ids for LINC02783 Gene

Summaries for LINC02783 Gene

GeneCards Summary for LINC02783 Gene

LINC02783 (Long Intergenic Non-Protein Coding RNA 2783) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02783 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02783 Gene

Genomics for LINC02783 Gene

GeneHancer (GH) Regulatory Elements for LINC02783 Gene

Promoters and enhancers for LINC02783 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J017188 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 761.3 +1.9 1893 5.8 TEAD4 CBFA2T2 PRDM1 MTA1 IKZF1 ZIC2 POLR2A RFX1 ZNF512 ATF1 LINC02783 CROCC SZRD1 NECAP2 PADI3 ATP13A2 ENSG00000282843
GH01J017182 Enhancer 0.7 Ensembl ENCODE dbSUPER 10.8 -4.3 -4282 3.8 ZIC2 REST PADI2 LINC02783 PADI4 RF00017-083
GH01J017176 Enhancer 0.7 Ensembl dbSUPER 9.1 -12.7 -12683 1.8 CREB1 ATF1 ATF7 NFE2 ATF2 ZNF558 PADI1 PADI3 PADI4 LINC02783 RF00017-083
GH01J017108 Enhancer 0.8 Ensembl ENCODE dbSUPER 7.2 -80.1 -80141 2.9 ZNF362 ZNF133 ZBTB8A ZBTB20 ZNF664 CROCC CROCCP3 LINC01772 SDHB LINC02783 HSALNG0001255 PADI2
GH01J017196 Enhancer 0.7 Ensembl dbSUPER 7.9 +9.3 9318 1.4 SP7 ZIC2 PRDM10 ZNF692 ZBTB48 GLIS1 LINC02783 ENSG00000282843
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02783 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02783 Gene

Genomic Locations for LINC02783 Gene
chr1:17,189,783-17,198,584
(GRCh38/hg38)
Size:
8,802 bases
Orientation:
Plus strand
chr1:17,516,278-17,524,112
(GRCh37/hg19)
Size:
7,835 bases
Orientation:
Plus strand

Genomic View for LINC02783 Gene

Genes around LINC02783 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02783 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02783 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02783 Gene

Proteins for LINC02783 Gene

Post-translational modifications for LINC02783 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02783 Gene

Domains & Families for LINC02783 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02783 Gene

Function for LINC02783 Gene

genes like me logo Genes that share phenotypes with LINC02783: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02783 Gene

Localization for LINC02783 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02783 Gene

Pathways & Interactions for LINC02783 Gene

PathCards logo

SuperPathways for LINC02783 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02783 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02783 Gene

Drugs & Compounds for LINC02783 Gene

No Compound Related Data Available

Transcripts for LINC02783 Gene

mRNA/cDNA for LINC02783 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNACentral transcripts :
(12) LNCipedia transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02783 Gene

No ASD Table

Relevant External Links for LINC02783 Gene

GeneLoc Exon Structure for
LINC02783
ECgene alternative splicing isoforms for
LINC02783

Expression for LINC02783 Gene

SOURCE GeneReport for Unigene cluster for LINC02783 Gene:

Hs.522935
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02783 Gene

Orthologs for LINC02783 Gene

Evolution for LINC02783 Gene

ENSEMBL:
Gene Tree for LINC02783 (if available)
TreeFam:
Gene Tree for LINC02783 (if available)

No data available for Orthologs for LINC02783 Gene

Paralogs for LINC02783 Gene

No data available for Paralogs for LINC02783 Gene

Variants for LINC02783 Gene

Sequence variations from dbSNP and Humsavar for LINC02783 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000264209 -- 17,187,835(+) G/A upstream_transcript_variant
rs1000305020 -- 17,187,850(+) C/T upstream_transcript_variant
rs1000325256 -- 17,193,871(+) G/A intron_variant
rs1000386051 -- 17,193,245(+) G/A/T intron_variant
rs1000443658 -- 17,193,459(+) G/C intron_variant

Additional Variant Information for LINC02783 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02783

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02783 Gene

Disorders for LINC02783 Gene

No disorders were found for LINC02783 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02783 Gene

Publications for LINC02783 Gene

  1. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3 56

No data available for External Links for LINC02783 Gene

Products for LINC02783 Gene

Sources for LINC02783 Gene