Aliases for LINC02779 Gene

Subcategory (RNA class) for LINC02779 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02779 Gene

  • Long Intergenic Non-Protein Coding RNA 2779 2 3 5
  • LINC02779 2 5
  • NONHSAG004347.2 91
  • Lnc-RAB3GAP2-3 165
  • HSALNG0010726 164

External Ids for LINC02779 Gene

Summaries for LINC02779 Gene

GeneCards Summary for LINC02779 Gene

LINC02779 (Long Intergenic Non-Protein Coding RNA 2779) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02779 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02779 Gene

Genomics for LINC02779 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02779 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J220486 Enhancer 0.8 Ensembl ENCODE 600.7 +0.3 261 1.4 CREB1 ATF7 PRDM10 ZNF629 RFX1 JUND PRDM1 POLR2A ZNF600 ZNF10 LINC02779 LOC105372928 piR-61190 MARK1 RAB3GAP2
GH01J220483 Enhancer 0.6 Ensembl ENCODE 0.7 +3.3 3343 1.9 CEBPB ZFHX2 ATF2 EGR2 MARK1 C1orf115 LINC02779 piR-61190 RAB3GAP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02779 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02779 Gene

Genomic Locations for LINC02779 Gene
chr1:220,483,165-220,487,618
(GRCh38/hg38)
Size:
4,454 bases
Orientation:
Minus strand
chr1:220,658,446-220,660,385
(GRCh37/hg19)
Size:
1,940 bases
Orientation:
Minus strand

Genomic View for LINC02779 Gene

Genes around LINC02779 on UCSC Golden Path with GeneCards custom track
LINC02779 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02779 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02779 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02779 Gene

Proteins for LINC02779 Gene

Post-translational modifications for LINC02779 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02779 Gene

Domains & Families for LINC02779 Gene

Gene Families for LINC02779 Gene

genes like me logo Genes that share domains with LINC02779: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02779 Gene

Function for LINC02779 Gene

Phenotypes From GWAS Catalog for LINC02779 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02779 Gene

Localization for LINC02779 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02779 Gene

Pathways & Interactions for LINC02779 Gene

PathCards logo

SuperPathways for LINC02779 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02779 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02779 Gene

Drugs & Compounds for LINC02779 Gene

No Compound Related Data Available

Transcripts for LINC02779 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02779 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEDB16_9606 lncRNA 814 2

HGNC: 54299,

Ensembl: ENST00000446169 (view in UCSC) ,

URS0000077CE5_9606 lncRNA 390 2

LNCipedia: lnc-RAB3GAP2-3:1,

NONCODE: NONHSAT009607.2,

URS00009C371C_9606 lncRNA 390 2

LncBook: HSALNT0022249,

NONCODE: NONHSAT152981.1,

LINC02779 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02779 Gene

No ASD Table

Relevant External Links for LINC02779 Gene

GeneLoc Exon Structure for
LINC02779

No data available for mRNA/cDNA for LINC02779 Gene

Expression for LINC02779 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02779 Gene

Orthologs for LINC02779 Gene

Evolution for LINC02779 Gene

ENSEMBL:
Gene Tree for LINC02779 (if available)
TreeFam:
Gene Tree for LINC02779 (if available)

No data available for Orthologs for LINC02779 Gene

Paralogs for LINC02779 Gene

No data available for Paralogs for LINC02779 Gene

Variants for LINC02779 Gene

Additional dbSNP identifiers (rs#s) for LINC02779 Gene

Additional Variant Information for LINC02779 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02779

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02779 Gene

Disorders for LINC02779 Gene

No disorders were found for LINC02779 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02779 Gene

Publications for LINC02779 Gene

No publications were found for LINC02779 Gene.

No data available for Mastermind for LINC02779 Gene

Products for LINC02779 Gene

Sources for LINC02779 Gene